Table 2.
Sequence differences in those regions predicted to contain polymorphisms on the basis of microarray data
| Serovar | Gene | SR* | Rank† | Difference (%)‡ | GenBank ID§ |
| (a) High-ranking genes | |||||
| A/Har-1 | CT679 (tsf) | 3.6 | 3 | 7.9 | AY539791 |
| A/Har-1 | CT622 | 2.9 | 4 | 2.2 | AY539765 |
| A/Har-1 | CT870 (pmpF) | 2.8 | 7 | 7.5 | AY539793 |
| A/Har-1 | CT681 (ompA) | 3.9 | 2 | 21.6 | J03813 |
| B/TW-5 | CT870 (pmpF) | 2.1 | 23 | 7.5 | AY539794 |
| B/TW-5 | CT681 (ompA) | 2.2 | 16 | 6.4 | M17342 |
| Ba/AP-2 | CT870 (pmpF) | 3.4 | 3 | 7.5 | AY539795 |
| Ba/AP-2 | CT675 (karG) | 2.6 | 25 | 2.9 | AY539779 |
| C/TW-3 | CT870 (pmpF) | 2.3 | 13 | 7.5 | AY539796 |
| C/TW-3 | CT681 (ompA) | 2.6 | 2 | 22.0 | M17343 |
| E/Bour | CT622 | 2.8 | 30 | 9.2 | AY539768 |
| E/Bour | CT675 (karG) | 3.6 | 2 | 4.2 | AY539781 |
| F/IC-CAL3 | CT622 | 2.2 | 7 | 9.1 | AY539769 |
| F/IC-CAL3 | CT679 (tsf) | 4.5 | 2 | 7.6 | AY539790 |
| F/IC-CAL3 | CT681 (ompA) | 3.5 | 3 | 15.8 | X52080 |
| G/UW-57 | CT681 (ompA) | 5.1 | 1 | 19.1 | AF063199 |
| H/UW-4 | CT622 | 2.7 | 4 | 1.2 | AY539771 |
| J/UW-36 | CT870 (pmpF) | 3.6 | 14 | 7.5 | AY539798 |
| K/UW-31 | CT681 (ompA) | 8.5 | 1 | 21.2 | AF063204 |
| L1/440 | CT622 | 2.5 | 17 | 13.3 | AY539775 |
| L1/440 | CT868 | 2.7 | 9 | 2.2¶ | AY539792 |
| L1/440 | CT870 (pmpF) | 3.0 | 4 | 14.6 | AY539803 |
| L2/434 | CT144 | 3.2 | 7 | 10.8 | AY539751 |
| L2/434 | CT293 (accD) | 2.5 | 11 | 3.4 | AY539763 |
| L2/434 | CT622 | 3.1 | 8 | 13.3 | AY539776 |
| L2/434 | CT870 (pmpF) | 2.6 | 10 | 14.6 | AY539804 |
| L2/434 | CT681 (ompA) | 3.2 | 6 | 10.5 | M14738 |
| L3/404 | CT293 (accD) | 2.7 | 10 | 3.4 | AY539764 |
| L3/404 | CT681 (ompA) | 6.5 | 2 | 21.1 | X55700 |
| L3/404 | CT622 | 3.8 | 5 | 13.3 | AY539777 |
| L3/404 | CT870 (pmpF) | 2.7 | 9 | 14.6 | AY539805 |
| (b) Intermediate- to low-ranking genes | |||||
| A/Har-1 | CT293 (accD) | 1.9 | 307 | 0.0 | AY539752 |
| B/TW-5 | CT293 (accD) | 1.5 | 406 | 0.0 | AY539753 |
| Ba/AP-2 | CT293 (accD) | 1.7 | 330 | 0.0 | AY539754 |
| C/TW-3 | CT293 (accD) | 1.6 | 403 | 0.0 | AY539755 |
| E/Bour | CT293 (accD) | 1.8 | 372 | 0.4 | AY539756 |
| F/IC-CAL3 | CT293 (accD) | 1.2 | 521 | 0.4 | AY539757 |
| G/UW-57 | CT293 (accD) | 1.3 | 365 | 0.0 | AY539758 |
| H/UW-4 | CT293 (accD) | 1.7 | 305 | 0.0 | AY539759 |
| J/UW-36 | CT293 (accD) | 2.0 | 299 | 0.0 | AY539761 |
| K/UW-31 | CT622 | 1.3 | 375 | 0.0 | AY539774 |
| G/UW-57 | CT675 (karG) | 1.2 | 469 | 0.0 | AY539783 |
| K/UW-31 | CT675 (karG) | 1.3 | 475 | 0.0 | AY539787 |
| F/IC-CAL3 | CT870 (pmpF) | 1.2 | 489 | 0.0 | AY539798 |
| G/UW-57 | CT870 (pmpF) | 1.1 | 673 | 0.0 | AY539799 |
| K/UW-31 | CT870 (pmpF) | 1.2 | 626 | 0.0 | AY539802 |
*Average signal ratio; †rank based on signal ratio within that strain; ‡percent nucleotide difference of region between test strain and reference strain; §GenBank accession number; ¶contained 33-bp deletion.