Table 1.
Genomea | Steinernema nematode hostb | Sourcec | Genome Accessiond Numberd | Studye | Genome Size (Mb)f | G + C content (%)g | Number of CDSh | Coding Density (%)i | Number of Contigsj | N50 Value (Kb)k |
---|---|---|---|---|---|---|---|---|---|---|
Xb-Sf-FL | S. feltiae | Florida, USA | [EMBL:PRJEB432] | 5 | 4.47 | 44.89 | 4508 | 83.43 | 436 | 45 |
Xb-Sf-FR | S. feltiae | France | [EMBL:PRJEB4319] | 5 | 4.41 | 44.75 | 4441 | 84.06 | 449 | 45 |
Xb-Sf-MD | S. feltiae | Moldova | [EMBL:PRJEB4321] | 5 | 4.66 | 44.36 | 4695 | 83.82 | 397 | 52 |
Xb-Si | S. intermedium | North Carolina, USA | [EMBL:PRJEB4327] | 5 | 4.71 | 44.89 | 4719 | 83.39 | 467 | 51 |
Xb-Sj | S. jollieti | Monsanto | [EMBL:PRJEB4326] | 5 | 3.93 | 44.48 | 3939 | 83.20 | 457 | 46 |
Xb-Sj-2000 | S. jollieti | Monsanto | [EMBL:FN667741] | 31 | 4.23 | 44.97 | 4406 | 84.07 | 1 | NA |
Xb-Sk-BU | S. kraussei | Becker Underwood | [EMBL:PRJEB4325] | 5 | 4.72 | 44.75 | 4860 | 83.10 | 752 | 33 |
Xb-Sk-CA | S. kraussei | Quebec, CA | [EMBL:PRJEB4324] | 5 | 4.21 | 44.18 | 4097 | 83.96 | 422 | 34 |
Xb-So | S. oregonense | Oregon, USA | [EMBL:PRJEB4323] | 5 | 4.13 | 44.90 | 4261 | 84.30 | 429 | 51 |
Xb-Sp | S. puntauvense | Costa Rica | [EMBL:PRJEB4322] | 5 | 4.48 | 44.32 | 4584 | 84.34 | 443 | 51 |
aAbbreviation used for bacterial genomes
bThe Steinernema nematode host species from which the X. bovienii bacterial strain was isolated
cThe location or company from which the nematode was obtained
dThe accession number for the bacterial genome in EMBL
eStudy in which the genome sequence was originally reported. Number corresponds to the citation
fSize of the genome in megabases
gGC content percentage of the genome
hTotal number of coding sequences in the genome
iAmount of the genome that is coding sequences
jNumber of contigs in the genome sequence
kMedian size of the contigs in megabases. NA indicates not applicable for the finished genome