. 2015 May 12;16:33. doi: 10.1186/s12881-015-0178-x

Table 4.

Details of SNP markers used for the haplotype analysis

db SNP ID	Physical position	VSX1 transcript ID	cDNA change	Protein change	Allele frequency^a	Population frequency^a
rs12480307	chr20: 25078910	NM_014588	c.546A > G	p.A182A	A : 0.748	A : 75 %
rs12480307	chr20: 25078910	NM_014588	c.546A > G	p.A182A	G : 0.252	G : 25 %
rs56157240	chr20: 25078745	NM_014588	c.627 + 84 T > A	-	T: 0.252	T: 25 %
rs56157240	chr20: 25078745	NM_014588	c.627 + 84 T > A	-	A: 0.748	A: 75 %
rs6138482	chr20: 25078806	NM_014588	c.627 + 23G > A	-	G: 0.735	G: 74 %
rs6138482	chr20: 25078806	NM_014588	c.627 + 23G > A	-	A: 0.265	A: 26 %
(IVS3-24C)	chr20: 25078976	NM_014588	c.504-24C > T	-	C:0.999	Not available
(IVS3-24C)	chr20: 25078976	NM_014588	c.504-24C > T	-	T:0.001	Not available

^aAllele and population frequencies were determined by 1000 Genomes Project Phase 1, HapMap, and ESP for human