Table 1. Putative transcription factors enriched or reduced in cucumber peel at 8 and 16 days post-pollination.
| Transcript Number | Cucumber CDS | ESTs/100,000 | % reads in peel | Hit ID Arabidopsis | Hit Description | E value | |
|---|---|---|---|---|---|---|---|
| Pericarp | Peel | ||||||
| 14161 | 3M710870.1 | 0.00 | 5.99 | 100.0 | At1g80840 | WRKY40 transcription factor | 1.0E-77 |
| 9034 | 3M809420.1 | 1.07 | 7.95 | 88.2 | At2g42200 | SPL9 (SQUAMOSA Promoter binding protein-like 9) | 1.0E-25 |
| 4603 | 5M603910.1 | 1.03 | 6.81 | 86.8 | At1g10470 | ARR4 (RESPONSE REGULATOR 4) | 1.0E-62 |
| 29023 | 2M301540.1 | 1.07 | 6.77 | 86.4 | At5g01880 | Zn finger (C3HC4-type RING finger) | 4.0E-33 |
| 9225 | 3M816030.1 | 8.96 | 52.03 | 85.1 | At1g08810 | MYB60 (myb domain protein 60) | 4.0E-76 |
| 29496 | 2M354820.1 | 2.09 | 10.54 | 83.5 | At1g27730 | STZ (salt tolerance zinc finger) | 2.0E-53 |
| 22834 | 6M094760.1 | 2.65 | 11.47 | 83.5 | At5g50570 | Squamosa promoter binding protein, putative | 5.0E-43 |
| 15026 | 3M750350.1 | 1.03 | 5.17 | 83.3 | At5g03720 | At-HSFA3 (heat shock transcription factor A3) | 2.0E-74 |
| 5285 | 2M428380.1 | 1.55 | 7.24 | 82.4 | At2g23320 | WRKY15; calmodulin binding | 1.0E-69 |
| 42396 | 3M018320.1 | 4.17 | 19.11 | 82.1 | At4g17490 | AtERF6 (ethylene response element binding factor 6) | 1.0E-52 |
| 43150 | 3M826690.1 | 2.65 | 11.40 | 81.1 | At3g28910 | MYB30 (myb domain protein 30) | 9.0E-81 |
| 13524 | 1M033200.1 | 4.14 | 17.34 | 80.7 | At5g62470 | MYB96 (myb domain protein 96) | 2.0E-89 |
| 7109 | 7M429520.1 | 2.59 | 10.41 | 80.1 | At5g06710 | HAT14 (Homeobox from Arabidopsis thaliana) | 9.0E-79 |
| 14554 | 3M733980.1 | 7.36 | 0.00 | 0.0 | At2g37740 | ZFP10 (Zinc finger protein 10) | 6.0E-19 |
| 41443 | 7M378520.1 | 29.80 | 0.00 | 0.0 | At3g04730 | IAA16; early auxin induced, transcription factor | 1.0E-72 |
| 25851 | Chrom5NA a | 7.86 | 0.00 | 0.0 | At4g09960 | STK (SEEDSTICK) | 4.0E-54 |
| 2743 | 6M520410.3 | 10.46 | 0.00 | 0.0 | At4g18960 | AG (AGAMOUS) | 5.0E-45 |
| 42893 | 1M467100.1 | 84.30 | 0.55 | 0.7 | At2g42830 | SHP2 (SHATTERPROOF 2) | 4.0E-74 |
| 38366 | 5M146260.1 | 9.46 | 0.25 | 2.6 | At5g47610 | Zn finger (C3HC4-type RING finger) | 8.0E-35 |
| 50868 | 3M016400.1 | 7.78 | 0.21 | 2.7 | At4g18020 | APRR2 (pseudo response regulator 2) | 1.0E-101 |
| 22831 | 6M095270.1 | 5.80 | 0.21 | 3.6 | At1g24260 | SEP3 (SEPALATTA3) | 2.0E-65 |
| 48984 | 6M291920.1 | 17.25 | 0.78 | 4.3 | At5g60450 | ARF4 (Auxin response factor 4) | 1.0E-129 |
| 22337 | 5M270900.1 | 16.64 | 0.75 | 4.3 | At2g02070 | AtIDD5 (Arabidopsis thaliana Intermediate domain 5) | 1.0E-150 |
| 18472 | 1M651710.1 | 8.44 | 0.50 | 5.6 | At1g65480 | FT (FLOWERING LOCUS T) | 2.0E-73 |
| 2433 | 6M526230.1 | 10.51 | 0.71 | 6.4 | At2g34830 | WRKY35 (WRKY DNA binding protein 35) | 2.0E-71 |
| 25082 | 4M645240.1 | 10.07 | 0.96 | 8.7 | At1g10120 | DNA binding transcription factor | 2.0E-63 |
| 24179 | 2M000630.1 | 28.67 | 2.78 | 8.8 | At2g19810 | Zn finger (CCCH-type family protein) | 1.0E-101 |
| 51052 | 5M198240.1 | 18.85 | 1.99 | 9.6 | At5g05790 | MYB family transcription factor | 3.0E-71 |
| 48460 | 3M073900.1 | 37.82 | 4.09 | 9.8 | At1g50640 | ERF3 (ethylene response element binding factor 3) | 8.0E-61 |
a Not annotated—located in cucumber genome, but not currently annotated in Chinese Long v.2 draft