Table 1.
List of proteins, whose abundance changes specifically upon infection with a SIX knockout as compared to wild-type Fol.
| ID | GO | Functional description | u/d | log10 LFQ | log10 FC Six vs. Fol007 | adjPval Six vs. Fol007 |
|---|---|---|---|---|---|---|
| Avr3 | ||||||
| Solyc09g075460.1.1 | cw | Polygalacturonase-like protein-like | d | 7.5 | −1.1 | 0.07 |
| Solyc06g083040.1.1 | p | Serine carboxypeptidase 1 | d | 7.6 | −0.3 | 0.06 |
| Solyc02g088820.1.1 | p | Serine carboxypeptidase K10B2.2 | d | 5.9 | −2.1 | 0.02 |
| Solyc01g067740.1.1 | r | Superoxide dismutase | d | 7.8 | −1.2 | 0.07 |
| Solyc03g098710.1.1 | sr | Kunitz-type proteinase inhibitor A4 (Fragment) | u | 6.7 | 1.1 | 0.10 |
| Solyc04g080260.1.1 | sr | Glucan endo-1 3-beta-glucosidase (PR-2) | d | 9.0 | −0.5 | 0.05 |
| Avr2 | ||||||
| Solyc08g081480.1.1 | cw | Polygalacturonase-like protein | d | 8.8 | −0.2 | 0.08 |
| Solyc04g007160.1.1 | cw | Alpha-glucosidase | u | 6.7 | 0.7 | 0.09 |
| Solyc04g077190.1.1 | cw | Endo-1 4-beta-xylanase | u | 9.1 | 0.3 | 0.04 |
| Solyc05g009470.1.1 | cw | Alpha-glucosidase | u | 8.5 | 0.7 | 0.10 |
| Solyc07g053540.1.1 | cw | Fasciclin-like arabinogalactan protein | u | 8.1 | 0.7 | 0.06 |
| Solyc07g065110.1.1 | m | Protease inhibitor/seed storage/lipid transfer protein family protein | d | 7.8 | −0.3 | 0.07 |
| Solyc01g068380.1.1 | m | Purple acid phosphatase | u | 6.8 | 0.7 | 0.06 |
| Solyc05g013720.1.1 | m | Alpha-galactosidase | u | 8.3 | 0.5 | 0.05 |
| Solyc06g050130.1.1 | m | Alpha-galactosidase-like protein | u | 6.3 | 0.3 | 0.09 |
| Solyc01g099770.1.1 | na | Translationally-controlled tumor protein homolog | d | 7.9 | −0.3 | 0.06 |
| Solyc08g075390.1.1 | na | Isopentenyl-diphosphate delta-isomerase family protein | d | 7.1 | −0.6 | 0.04 |
| Solyc12g014440.1.1 | na | BNR/Asp-box repeat protein | d | 6.0 | −0.8 | 0.07 |
| Solyc02g087250.1.1 | na | Group II intron splicing factor CRS1-like | u | 7.9 | 0.8 | 0.06 |
| Solyc11g040330.1.1 | na | Endo-1 4-beta-xylanase | u | 8.1 | 0.4 | 0.05 |
| Solyc02g092670.1.1 | p | Subtilisin-like protease | d | 9.7 | −0.2 | 0.06 |
| Solyc09g098340.1.1 | p | Aspartic proteinase-like protein | d | 8.2 | −0.2 | 0.07 |
| Solyc05g046010.1.1 | po | Peroxidase | d | 8.2 | −0.2 | 0.08 |
| Solyc02g079510.1.1 | po | Peroxidase | u | 7.8 | 1.3 | 0.05 |
| Solyc03g083900.1.1 | r | Laccase-22 | d | 8.2 | −0.4 | 0.02 |
| Solyc10g007070.1.1 | r | CT099 | u | 8.1 | 0.2 | 0.08 |
| Solyc12g008580.1.1 | sr | Glucan endo-1 3-beta-glucosidase | d | 8.1 | −0.3 | 0.07 |
| Solyc12g056390.1.1 | sr | Thaumatin-like protein | u | 8.8 | 2.7 | 0.00 |
| Six5 | ||||||
| Solyc06g073190.1.1 | m | Fructokinase-like | d | 7.8 | −0.4 | 0.08 |
| Solyc09g009020.1.1 | m | Enolase | d | 7.6 | −0.6 | 0.03 |
| Solyc01g087610.1.1 | m | Alpha-N-acetylglucosaminidase | u | 8.0 | 0.3 | 0.07 |
| Solyc02g070070.1.1 | m | FAD-binding domain-containing protein | u | 6.5 | 0.5 | 0.07 |
| Solyc08g067500.1.1 | m | Non-specific lipid-transfer protein | u | 8.3 | 1.0 | 0.05 |
| Solyc10g075100.1.1 | m | Non-specific lipid-transfer protein | u | 8.4 | 0.3 | 0.03 |
| Solyc11g066290.1.1 | m | Icc family phosphohydrolase | u | 8.8 | 0.7 | 0.04 |
| Solyc04g045340.1.1 | na | Phosphoglucomutase | d | 6.3 | −1.0 | 0.07 |
| Solyc12g014270.1.1 | na | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A | d | 6.4 | −1.1 | 0.00 |
| Solyc04g054980.1.1 | na | Lipoxygenase homology domain-containing protein | u | 6.9 | 0.9 | 0.03 |
| Solyc08g074620.1.1 | na | Polyphenol oxidase | u | 7.4 | 0.9 | 0.07 |
| Solyc10g074820.1.1 | na | Unknown Protein | u | 7.7 | 1.3 | 0.04 |
| Solyc05g052600.1.1 | o | Fructose-1 6-bisphosphatase class 1 | d | 6.6 | −1.2 | 0.04 |
| Solyc03g123900.1.1 | p | Mannosyl-oligosaccharide 1 2-alpha-mannosidase | u | 7.8 | 0.5 | 0.09 |
| Solyc12g099160.1.1 | p | Serine carboxypeptidase K10B2.2 | u | 8.8 | 0.3 | 0.04 |
| Solyc05g046020.1.1 | po | Peroxidase | u | 8.0 | 1.1 | 0.02 |
| Solyc09g007520.1.1 | po | Peroxidase | u | 9.5 | 0.3 | 0.10 |
| Solyc08g079090.1.1 | r | Laccase-22 | u | 8.5 | 0.3 | 0.10 |
| Solyc01g108840.1.1 | s | Receptor-like kinase | u | 8.2 | 0.2 | 0.06 |
| Solyc02g061770.1.1 | sr | Endochitinase | d | 9.3 | −0.4 | 0.06 |
| Solyc04g007910.1.1 | sr | Glucan endo-1 3-beta-glucosidase | d | 6.4 | −1.0 | 0.07 |
| Solyc02g083760.1.1 | sr | Thaumatin-like protein | u | 6.7 | 0.6 | 0.10 |
| Solyc04g080260.1.1 | sr | Glucan endo-1 3-beta-glucosidase | u | 9.7 | 0.2 | 0.05 |
| Solyc06g072230.1.1 | sr | Kunitz trypsin inhibitor | u | 9.2 | 0.4 | 0.06 |
| Six6 | ||||||
| Solyc08g005800.1.1 | cw | Pectinacetylesterase like protein | d | 8.7 | −0.3 | 0.07 |
| Solyc08g066810.1.1 | cw | Glycosyl hydrolase family | d | 7.5 | −0.9 | 0.07 |
| Solyc04g009630.1.1 | cw | Alpha-glucosidase | u | 7.9 | 0.7 | 0.09 |
| Solyc11g005770.1.1 | cw | Pectinesterase family protein | u | 8.8 | 0.2 | 0.07 |
| Solyc03g031800.1.1 | cw | Xyloglucan endotransglucosylase/hydrolase | u | 8.0 | 1.2 | 0.06 |
| Solyc07g017600.1.1 | cw | Pectinesterase | u | 6.7 | 0.7 | 0.09 |
| Solyc04g076190.1.1 | d | Aspartic proteinase nepenthesin | d | 8.6 | −0.4 | 0.08 |
| Solyc10g081510.1.1 | m | 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase | d | 9.1 | −0.3 | 0.05 |
| Solyc03g113030.1.1 | m | Aldose 1-epimerase-like protein | u | 7.4 | 0.7 | 0.09 |
| Solyc06g082250.1.1 | m | Laccase-13 | u | 6.8 | 1.2 | 0.06 |
| Solyc07g007670.1.1 | m | Purple acid phosphatase 3 | u | 7.8 | 1.2 | 0.06 |
| Solyc01g112080.1.1 | na | LysM-domain GPI-anchored protein | d | 7.2 | −0.9 | 0.09 |
| Solyc10g074820.1.1 | na | Unknown Protein | d | 7.7 | −0.3 | 0.06 |
| Solyc10g081120.1.1 | na | Alpha-L-arabinofuranosidase | d | 9.6 | −0.2 | 0.06 |
| Solyc11g040330.1.1 | na | Endo-1 4-beta-xylanase | d | 6.4 | −1.3 | 0.07 |
| Solyc02g024050.1.1 | o | Ferredoxin–NADP reductase | u | 6.4 | 0.8 | 0.09 |
| Solyc11g066620.1.1 | p | Aspartyl protease family prote | d | 7.2 | −0.8 | 0.06 |
| Solyc12g099160.1.1 | p | Serine carboxypeptidase | d | 8.5 | −0.3 | 0.02 |
| Solyc06g083030.1.1 | p | Serine carboxypeptidase | u | 7.9 | 1.0 | 0.10 |
| Solyc07g041970.1.1 | p | Subtilisin-like protease | u | 7.2 | 1.6 | 0.01 |
| Solyc02g077040.1.1 | p | Cathepsin B-like cysteine proteinase | u | 8.3 | 0.8 | 0.09 |
| Solyc05g054710.1.1 | p | Beta-hexosaminidase b | u | 7.1 | 1.0 | 0.04 |
| Solyc11g008810.1.1 | p | Beta-hexosaminidase b | u | 7.6 | 1.6 | 0.04 |
| Solyc10g084320.1.1 | p | Subtilisin-like protease | u | 7.5 | 1.4 | 0.05 |
| Solyc12g087940.1.1 | p | Aspartic proteinase nepenthesin-1 | u | 6.7 | 1.1 | 0.07 |
| Solyc12g088760.1.1 | p | Subtilisin-like protease | u | 9.3 | 0.5 | 0.05 |
| Solyc05g052280.1.1 | po | Peroxidase | d | 8.5 | −0.3 | 0.09 |
| Solyc09g007520.1.1 | po | Peroxidase | d | 8.0 | −0.4 | 0.07 |
| Solyc01g105070.1.1 | po | Peroxidase | d | 9.2 | −0.4 | 0.07 |
| Solyc06g076630.1.1 | po | Peroxidase | d | 8.7 | −0.2 | 0.07 |
| Solyc12g013900.1.1 | r | CT099 | d | 8.8 | −0.3 | 0.09 |
| Solyc02g094050.1.1 | r | Blue copper protein | u | 8.4 | 1.3 | 0.06 |
| Solyc07g064240.1.1 | r | CT099 | u | 7.1 | 1.5 | 0.02 |
| Solyc12g094460.1.1 | r | Laccase-2 | u | 7.5 | 1.3 | 0.06 |
| Solyc01g108840.1.1 | s | Receptor-like kinase | d | 7.8 | −0.4 | 0.05 |
| Solyc02g093210.1.1 | s | MAPprotein kinase-like protein | d | 7.9 | −0.4 | 0.07 |
| Solyc07g055690.1.1 | s | S-locus-specific glycoprotein | u | 7.5 | 1.9 | 0.01 |
| Solyc04g072000.1.1 | sr | Chitinase | d | 9.1 | −0.3 | 0.03 |
| Solyc06g072220.1.1 | sr | Kunitz trypsin inhibitor | d | 9.1 | −0.2 | 0.07 |
| Solyc06g072230.1.1 | sr | Kunitz trypsin inhibitor | d | 7.8 | −0.5 | 0.05 |
| Solyc10g074440.1.1 | sr | Endochitinase | d | 8.9 | −0.4 | 0.08 |
| Solyc10g079860.1.1 | sr | Beta-1 3-glucanase | d | 9.5 | −0.6 | 0.02 |
| Solyc09g007010.1.1 | sr | Pathogenesis related protein PR-1 | u | 7.5 | 1.9 | 0.06 |
| Solyc12g019890.1.1 | sr | Glucan endo-1 3-beta-glucosidase | u | 7.6 | 1.0 | 0.08 |
u, increased abundance; d, decreased abundance, Log10 Label Free Quantification (LFQ) values compared to Fol Wildtype (Fol007) and adjusted P-values (adjPval) are depicted. sr, stress responses; s, signaling; r, redox; po, peroxidases; p, protein modification/degradation; o, others; na, not assigned; m, metabolism; d, DNA/RNA related; cw, cell wall.