Table 1. Number of SNPs retained after filtering steps during the analysis of 32,720 Mbp of 121-bp Illumina paired-end sequence of genomic DNA of 17 common bean genotypes.

Filters	Number of SNPs Retained
Polymorphic among 17 common bean varieties	1,857,237
Elimination of SNPs residing within 25 nt of another SNP	1,232,064
Elimination of SNPs with A/T or G/C alleles	993,237
Elimination of SNPs with N in the 60-nt regions flanking the SNP	992,682

SNP, single-nucleotide polymorphism.