Table 1. Number of SNPs retained after filtering steps during the analysis of 32,720 Mbp of 121-bp Illumina paired-end sequence of genomic DNA of 17 common bean genotypes.
Filters | Number of SNPs Retained |
---|---|
Polymorphic among 17 common bean varieties | 1,857,237 |
Elimination of SNPs residing within 25 nt of another SNP | 1,232,064 |
Elimination of SNPs with A/T or G/C alleles | 993,237 |
Elimination of SNPs with N in the 60-nt regions flanking the SNP | 992,682 |
SNP, single-nucleotide polymorphism.