Table 1.
ENCODE RNA-Seq data used in this study
| Cell type | Tissue | Condition | Number of replicates | |||
|---|---|---|---|---|---|---|
| Tier | CSHL paired-end | Caltech single-end | Caltech paired-end | |||
| A549 | Epithelium | Cancer | 2 | 2 | - | - |
| B-cells CD20+ | Blood | Normal | 2 | 2 | - | - |
| GM12878 | Blood | Normal | 1 | 2 | 2 | 2 |
| H1-hESC | ESC | Normal | 1 | 2 | 2 | 4 |
| HUVEC | Blood vessel | Normal | 2 | 2 | 2 | 2 |
| HeLa-S3 | Cervix | Cancer | 2 | 2 | 2 | 2 |
| HepG2 | Liver | Cancer | 2 | 2 | 2 | 2 |
| IMR90 | Lung | Normal | 2 | 2 | - | - |
| K562 | Blood | Cancer | 1 | 2 | 2 | 2 |
| MCF-7 | Breast | Cancer | 2 | 2 | - | 3 |
| Monocytes CD14+ | Monocytes | Normal | 2 | 2 | - | - |
| SK-N-SH | Brain | Cancer | 2 | 2 | - | - |