Table 3. The SNP genotypes that are found in the combinations in cluster 1 and cluster 2.
genes | Cluster 1. | Cluster 2. |
---|---|---|
msh3 | rs61516981,rs37978931, rs2453831, rs50085071, rs37978961, rs16507371, rs2453321, rs2453311, rs267792 | |
atr | rs117077310 | |
atm | rs2285891 | |
nbn | rs133129281, rs18058461, rs70063221, rs133129712, rs27353841 | rs169019410, rs27353881, rs100908631, rs78400991, rs78292461, rs167861, rs7417771,rs69878731, rs132784531,rs22937751,rs18057931,rs18057941, rs18058411 |
xrcc5 | rs2079231, rs2079380, rs2079430, rs92885161, rs168554892 | rs8289091, rs8289111,rs7056491,rs8286991,rs8287011, rs8287021,rs2078761, rs2078781 |
mre11a | rs5111841, rs118204301, rs134477191, rs134476821 | rs5216691,rs5847071, rs5521261,rs30170771, rs5887011,rs5225961,rs5920681,rs6547181 |
prkdc | rs81781071, rs81780991, rs81781761, rs81780571 | rs69957561, rs70039081 |
rad50 | rs65960842, rs27063571 | rs27063381,rs22440121,rs27063471,rs22461761, rs121875371,rs25223941,rs21069841,rs177725831, rs22370601, rs20407041, rs20743691 |
xrcc6 | rs1327742 |
Mismatch repair pathway: msh3. DNA damage response pathway: atr, atm. double strand breaks repair pathway: nbn, xrcc5, mre11a, prkdc, rad50, xrcc6. 0,1,2 after rs number shows genotype (0 homozygous for the major allele, 1 heterozygous, 2 homozygous for the minor allele).