Table I. Useful resources for RNA-Seq.

Collection of frequently updated online resources and starting points for experimental protocols and tutorials for data analysis.

Web Site	URL	Description
RNA-seqlopedia	http://rnaseq.uoregon.edu	Comprehensive overview on all aspects of RNA-Seq, from experimental design to data analysis
SEQanswers	http://seqanswers.com/forums/	Online community on all aspects of NGS
RNA-Seq bioinformatics tools wiki	https://en.wikipedia.org/wiki/List_of_RNA-Seq_bioinformatics_tools	Comprehensive, frequently updated, and annotated collection of RNA-Seq bioinformatics tools
FASTX Toolkit	http://hannonlab.cshl.edu/fastx_toolkit/	Collection of tools for preprocessing of FASTX/FASTQ files
RobiNA	http://mapman.gabipd.org/web/guest/robin	User-friendly open source graphical interface to RNA-Seq data analysis
RNA-Seq Tutorial	https://pods.iplantcollaborative.org/wiki/pages/viewpage.action?pageId=10659468	RNA-Seq tutorial by the iPlant collaborative wiki
RNA-Seq analysis in the Cloud	https://github.com/griffithlab/rnaseq_tutorial/wiki	Comprehensive tutorial on RNA-Seq in the Cloud, with step-by-step instructions (Griffith et al., 2015)
Bioconductor rnaseqGene	http://www.bioconductor.org/help/workflows/rnaseqGene/	A detailed workflow for differential gene expression analysis using DESeq2