Table 1. Secondary structure estimation from the synchrotron radiation CD spectrum of Stl and comparison to the homology model.
BeStSel | CONTIN | |||
---|---|---|---|---|
CD analysis a | Model b | CD analysis a | Model b | |
Helix1 | 44.6 | 40.0 | 44.5 | 42.5 |
Helix2 | 23.0 | 21.4 | 18.8 | 21.4 |
β-sheet | 3.6 | 0.0 | 6.3 | 0.0 |
Turn | 8.4 | 7.5 | 9.0 | 10.4 |
Others | 20.5 | 31.1 | 21.4 | 25.7 |
Number of helices | 16 | 15 | 13 | 15 |
Average helix length | 11.8 | 11.5 | 13.5 | 11.9 |
aThe secondary structure composition from the CD spectrum was estimated by the BeStSel and CONTIN algorithms. The two algorithms use different secondary structure components, however, the overall helix, β-sheet and turn+others contents are comparable.