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. Author manuscript; available in PMC: 2015 Nov 5.
Published in final edited form as: J Neurochem. 2008 Feb 7;105(5):1979–1995. doi: 10.1111/j.1471-4159.2008.05288.x

Table 1.

Number of unique proteins identified in DNA affinity eluates by mass spectrometry*

Analysis 1 Analysis 2 Analysis 3 Combined
Eluate Matrix
Fig. 3A, lane 6
dsASE-1
Fig. 3A, lane 7
Matrix
Fig. 3A, lane 6
dsASE-1
Fig. 3B, lane 1
dsASE-2
Fig. 3B, lane 2
ssDNA
Fig. 3A, lane 5
dsASE-1
Fig. 3A, lane 7
Total number of proteins identified 347 390 565 468 264 404 422 916
Proteins in dsASE-1 & dsASE-2 combined 589
Proteins enriched in dsASE over matrix dsASE-1 : matrix ≥ 1.5 dsASE-1 : matrix ≥ 0.9** 464
Proteins present in dsASE-2 207
Proteins appreciably retained in dsASE-2 dsASE-2 : dsASE-1 ≥0.5 143
*

Based on one or more peptide hits

**

Calculation based on different amounts of protein loaded between gels to yield a relative ratio of dsASE-1 to matrix ≥1.5 (5 µg of protein per lane in Fig. 3A and 3 µg of protein per lane in Fig. 3B)