Table 2. NOE and RMSD Analyses for SLV Ensembles with Na+ Ions.
total no. of restraints =553 | original NMR | rerefinement |
---|---|---|
Deviation from Experimental Restraints | ||
NOE (Å) | 0.00029 ± 0.0004a | 0.0013 ± 0.0002 |
torsion (deg) | 0.0082 ± 0.0051 | 0 |
number of NOE deviations | 16.9 ± 2.9 | 11.2 ± 2.0 |
number of NOE deviations >0.1 Å | 0 | 2.4 ± 0.8 |
number of torsion deviations | 2.7 ± 1.7 | 0 |
number of torsion deviations >0.5 Å | 0 | 0 |
RMS Deviation from Ideal Geometry | ||
bonds (Å) | 0.0096 ± 0 | 0.068 ± 0.003 |
angles (deg) | 1.70 ± 0.01 | 2.89 ± 0.07 |
Heavy Atom RMSD to Minimized Average Structure | ||
overall (690–706, 690–705) (Å) | 1.11 ± 0.14, 1.38 ± 0.57 | 0.46 ± 0.16, 0.56 ± 0.39 |
stem (690–295,701–706) (Å) | 0.80 ± 0.08 | 0.21 ± 0.02 |
loop (696–700) (Å) | 0.73 ± 0.08 | 0.43 ± 0.16 |
Recalculated using the SANDER program in AMBER12.