Table 1. Reads and variants statistics of the 9 R. irregularis single spores.

Sample	# of reads	% of mapped reads	Average mapped read length	Average variant coverage	Average SNV coverage
INOQ 2	71 940	98	138	5 598	4 714
INOQ 3	4 456	98	105	276	226
INOQ 5	112 690	98	142	9 308	8 707
BEG144_2	5 521	95	136	436	381
BEG144_3	49 936	97	156	4 847	4 297
BEG144_8	36 707	96	144	3 282	3 028
BEG72_1	41 944	98	155	4 509	3 810
BEG72_2	28 258	98	156	2 861	2 689
BEG72_4	33 927	98	152	3 585	3 485
TOTAL	385 379
Mean	42 820	97	143	3 856	3 482