Table 1.
Primer/probe sequences and target pathogens and genomes.
| Primer/Probe | Sequence∗ | Pathogen target | Genome target |
|---|---|---|---|
| Influenza A virus | |||
| AI gene M forward primer | 5′ AGATGAGTCTTCTAACCGAGGTCG 3′ | AIV | Matrix |
| AI gene M reverse primer | 5′ TGCAAAAACATCTTCAAGTCTCTG 3′ | ||
| Probe AI gene M | FAM-TCAGGCCCCCTCAAAGCCGA –TAMRA | ||
| Newcastle disease virus | |||
| Forward primer | 5′ GGTGAGTCTATCCGGARGATACAAG 3′ | NDV | Fusion |
| Reverse primer | 5′ AGCTGTTGCAACCCCAAG 3′ | ||
| Probe | 5′ [FAM]AAGCGTTTCTGTCTCCTTCCTCCA [BHQ] 3′ | ||
∗Fluorescent dye abbreviations: 6FAM, 6-Carboxyfluorescein; TAMRA, tetramethylrhodamine; BHQ1 = Black Hole Quencher®-1.