Figure 3. Circular map of Dhc genomes using strain BAV1 as the reference genome.
Genomic coordinates are shown as 100 kbp intervals. From the outer ring, Ring 1 shows the rdhAB genes of strain BAV1. Ring 2 shows the G + C content of strain BAV1 shaded in red scale. Ring 3 shows a histogram of codon adaption index or codon usage bias of each gene larger than 200 codons, shaded in greyscale according to CUB value for emphasis, black indicates highest CUB value of strain BAV1. Rings 4 to 9 are CDS orthologous to strain BAV1 in strains GT, CBDB1, VS, 195, 11a, and MB, respectively. Curved lines inside circles adjoin repeated elements. The two HPRs of strain BAV1 are highlighted by arrows and dashed lines.
