Table 3. Sequences of oligonucleotide primers used in this study.

Name	Amplicon	Sequence (5′→3′)	Position of 5′ nucleotide in C1Je*	Size (nt)
F169	1	TAGGAACGGGGTTGAGAG	169	18
R6507	1	GTGCGAGAACRGCCTTAA	6 473	18
F5562	2	GTTTGAAYTCACGTGGYCATT	5 511	21
R7490	2	GARGTCTTCATCWGAACCCAC	7 459	21
F6943	3	GCTAGTGTTAGAAATGTCTGTGTT	6 923	24
R12466	3	AAAAGCCCTACTAACGTGGTC	12 435	21
F12224	4	CATCCTGCAATTGAYGGATTG	12 173	21
R18105	4	TCCGGGTACATGTCTACGTTA	18 074	21
F17830	5	GATTGGTCCATTGTGTACCC	17 782	20
R20131b	5	AAARCCTTCCGATGACGAGGT	20 100	21
F19786b	6	GTATTAAGRAGATGGTTGCCA	19 735	21
R26007	6	ATAACCGCATGAGAAAAGGCT	25 813	21
F24798	7	TAAAATGGCCKTGGTATGTGT	24 601	21
R29508	7	TAGCTCTTCCATTGTTGGCTC	29187	21

^*The positions of the oligonucleotides are given relative to the genome of FCoV C1Je (GenBank accession no. DQ848678).