Fig. 1. Predicted genome map of the Newt/2013/HUN (KP770140) with the conserved peptide domains identified by the CDD search (light grey regions). The amino acid positions at the top of the map indicate the borders of the peptide domains. White areas show genome regions with no identifiable functions by CDD search. The first amino acid positions of the 2Chel, 3Cpro and 3Dpol conserved picornaviral amino acid motifs are indicated. P1 represents viral structural proteins and P2 and P3 represent non-structural proteins. The predicted nucleotide and amino acid length of each genome/protein region is indicated in each gene box. Above each gene box, sequence contigs acquired from next generation sequencing are indicated by dark grey bars. The secondary RNA structure of the 5′ UTR is shown below.
