Table 1.

Read mapping from RNA-seq output

Phase	Strain	Animal	Total reads	Mapped reads	% Mapped	Genes
Acute	AN	714	51,634,511	50,136,688	97.1	13,574
		715	44,269,036	43,001,258	97.1	13,471
		717	44,842,419	43,542,173	97.1	13,559
	SD	618	48,194,423	46,090,448	95.6	14,035
		619	39,885,927	38,511,046	96.6	13,610
		620	45,447,598	43,769,395	96.3	13,745
Chronic	AN	707	44,446,497	42,956,572	96.6	13,763
		712	45,858,389	44,358,919	96.7	13,653
		713	43,186,929	41,819,751	96.8	13,632
	SD	605	49,095,638	47,230,803	96.2	13,861
		606	45,671,290	43,873,662	96.1	13,849
		608	45,194,438	43,242,894	95.7	13,926