Table 2.

Number of variants and regions included through each prioritization method

	SCC		AC		SCLC
	Variants	Regions	Variants	Regions	Variants	Regions
Novel variants P = 10−6 to 10−3	15	11	8	7	3	3
P < 0.0001 first stage	123	75	93	62	92	68
P > 0.0001 but SFDR rank in top 100	26	20	21	19	17	14
P > 0.0001 but ABF rank in top 100	20	19	35	29	36	32
P > 0.0001 but HM rank in top 100	12	12	24	24	47	39

Region corresponds to an area of LD R2 > 0.8 or with 500 kbp.