Table 1. List of differentially expressed genes (DEGs) in control and BPD L neurons.
| Upregulated in BPD neurons | ||||||
| PTPN3 | ZNF669 | APOPT1 | SMCHD1 | DHX57 | COL4A3BP | BDP1 |
| CLTC | SNRPN | SPTAN1 | ATXN3 | ZCCHC6 | ZNF274 | NFYC |
| GSK3B | CSNK1G1 | FUBP3 | UBE2W | KMT2C | MINK1 | KLHL24 |
| C9orf64 | ZNF800 | OCIAD1 | CECR1 | LINC00537 | TRIM66 | AGAP4 |
| TMEM87A | NFX1 | G6PC2 | CPEB4 | MALAT1 | RBM39 | PLD6 |
| KMT2A | CCZ1B | DICER1-AS1 | DBT | CROCCP2 | REEP2 | MGEA5 |
| HCG18 | PDCD6 | SLC22A3 | PAPD4 | PWRN2 | SCFD1 | KIF13A |
| MGC57346 | LETMD1 | BRWD1 | FNBP4 | FCRL2 | GREB1L | LMBRD2 |
| HNRNPD | CRB3 | UBE2H | KANSL1 | ZNF654 | GPATCH2L | SLC23A2 |
| CMBL | RIOK3 | PDIA2 | SLC25A27 | ZXDC | PKN2 | ZBTB11 |
| CLASP2 | CSNK1A1 | FNBP1 | NFATC3 | JAK2 | PIK3C2A | SYMPK |
| DYNC1H1 | SBNO1 | SFTPB | DIP2A | DIO2-AS1 | MTX3 | VPS53 |
| C10orf12 | LOC102546299 | L3MBTL1 | FKSG49 | ZMYM5 | POLR1B | TTC5 |
| MINOS1P1 | HIST1H2BD | NPAS3 | PHF20L1 | NLN | STAG2 | CEP95 |
| ZNF335 | TMEM161B | UBE2D3 | DUSP16 | C9orf84 | RAB21 | CAPN1 |
| TRAF4 | TRAF3IP2-AS1 | HAUS2 | NDFIP2 | TCP11L2 | NKTR | N4BP2L2 |
| PPP2R5C | WDR11 | CCAR1 | CWF19L2 | WDR41 | CYLD | COX17 |
| CTTN | NFASC | TTBK2 | FGFR1 | ZNF160 | MDM2 | MRPS5 |
| SCD5 | FGFR1OP2 | LOC151121 | SLC35E1 | KPNA5 | ANKRD10-IT1 | OSBP |
| CCDC90B | GTF2A2 | TXNL1 | ITGB8 | SPG7 | MYLK3 | ZBTB7A |
| LRCH3 | TRMT13 | FXR1 | PPM1A | TMEM33 | SIK3 | CKMT2-AS1 |
| TRPS1 | ACVR1B | PHF3 | MEG3 | SLC6A15 | ZNF493 | CNTFR-AS1 |
| KLF12 | CBFA2T2 | VPS13C | ABI2 | KIDINS220 | AZI2 | C4orf29 |
| DIP2B | RBM5 | RBM33 | SLC25A36 | AHI1 | ZBTB38 | MACF1 |
| USP34 | LOC100272216 | SUPT20H | TTC37 | ERP44 | ATP6V1H | ZCCHC11 |
| RFX7 | AFF4 | RASAL2 | LRRIQ1 | PHKB | ZFYVE16 | TGDS |
| RAB18 | KIF21A | ZC3H7B | CLEC4F | ANKRD12 | LOC728093 | CAMSAP2 |
| SNRPA1 | SCAF11 | GALNT2 | CYHR1 | FAM169A | NCAPH2 | RBBP6 |
| IFNL1 | ZNF791 | MGC12488 | PDXDC1 | ZNF518A | ELOVL5 | CLOCK |
| STRAP | LINC01007 | NFAT5 | STK32A | PAAF1 | PNISR | KIAA1522 |
| TMEM91 | CNOT4 | GRM5 | CDK13 | SGSM1 | PGF | PCMTD1 |
| ICA1 | DLGAP4 | PTEN | TMF1 | CRYZL1 | FOXK1 | LOC101926996 |
| MYO6 | VPS8 | LPXN | TTC17 | GNG2 | ANKRD13A | PGAP1 |
| PRKAA1 | URGCP | AGFG1 | MZT2B | HELB | AUTS2 | ATP9A |
| KLHDC10 | SEPT2 | ALMS1 | NDST4 | CAPN3 | C11orf80 | GOPC |
| SBF2 | GOSR1 | MORN4 | SART1 | CEP290 | GAD1 | RFPL3S |
| EEA1 | RBM14 | ARHGAP5 | FAM132A | BOD1L1 | ATF7IP | LOC100507311 |
| FCF1 | ZNF577 | GOLGA4 | LOC283045 | KIAA0754 | PIP5K1A | CLINT1 |
| RAB12 | FAM161B | MTMR9 | EPG5 | ZCCHC7 | PPP1R3E | NBR1 |
| FAM208B | UACA | NAALAD2 | PPWD1 | RHOQ | TTLL3 | MED6 |
| CCNT1 | SERPINB6 | FLJ41455 | STK38 | CRIPAK | MON2 | CSAD |
| TMEM67 | PPA2 | ZNF207 | MKLN1 | WDR61 | ||
| Downregulated in BPD neurons | ||||||
| PRCD | C3orf70 | CDKN2C | MVK | RAB22A | TTL | TRAM2-AS1 |
| VPS13B | SLC6A20 | MKI67 | NEK1 | LYRM7 | GPR125 | MYO1D |
| ZADH2 | NOL12 | ALMS1 | TMEM44 | LOC728705 | ACADM | KCTD15 |
| MCOLN1 | PBK | PMEPA1 | GAB1 | SCN4B | ELOVL2 | ASPH |
| C6orf203 | FAM105A | PARD3 | RPTOR | |||