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. Author manuscript; available in PMC: 2016 Nov 14.
Published in final edited form as: FEBS Lett. 2015 Aug 20;589(22):3419–3432. doi: 10.1016/j.febslet.2015.08.015

Table 2.

Relevant distances in the active sites of MBLs in EPa or EIb complexes from X-ray crystallography.

Penicillins Distance (Å)
PDB code Enzyme Resolution (Å) Hydrolized β-lactam Reference Chain Zn1-Zn2 Wat1-Zn1 Wat1-Zn2 Wat2-Zn2 C7O-Zn1 C7O-Zn2 C3O-Zn2 N4-Zn2
3Q6X NDM-1a (B1) 1.3 ampicillin [59] A 4.6 2.1 3.0 - 2.4 4.3 2.2 2.2
B 4.6 2.0 3.0 - 2.5 4.3 2.2 2.2
4EYF NDM-1a (B1) 1.8 penicillin G [44] A 4.6 1.9 3.1 - 2.5 4.4 2.2 2.2
B 4.6 2.0 3.1 - 2.4 4.4 2.1 2.2
4EY2 NDM-1a (B1) 1.2 methicillin [44] A 4.6 2.0 3.0 - 2.5 4.4 2.2 2.1
B 4.6 2.0 3.0 - 2.5 4.4 2.2 2.2
4EYB NDM-1a (B1) 1.2 oxacillin [44] A 4.5 2.0 2.9 - 2.5 4.4 2.2 2.1
B 4.6 2.0 3.0 - 2.5 4.4 2.1 2.1
Cephalosporins
PDB code Enzyme Resolution (Å) Hydrolized β-lactam Reference Chain Zn1-Zn2 Wat1-Zn1 Wat1-Zn2 Wat2-Zn2 C8O-Zn1 C8O-Zn2 C4O-Zn2 N5-Zn2
2AIO L1 (B3)a 1.7 moxalactam [60] 3.7 2.0 2.2 - 2.4 4.2 2.3 2.4
4RL0 NDM-1b (B1) 1.3 cefuroxime [79] A 3.8 2.0 2.2 - 2.8 4.2 2.1 2.4
B 3.8 2.0 2.2 - 2.9 4.2 2.2 2.3
4RL2 NDM-1a (B1) 2.0 cephalexin [79] A 4.5 1.8 3.0 - 2.5 4.3 2.3 2.4
B 4.5 2.0 2.8 - 2.4 4.3 2.3 2.4
Carbapenems
PDB code Enzyme Resolution (Å) Hydrolized β-lactam Reference Chain Zn1-Zn2 Wat1-Zn1 Wat1-Zn2 Wat2-Zn2 C7O-Zn1 C7O-Zn2 C3O-Zn2 N4-Zn2
4EYL NDM-1a (B1) 1.9 meropenem [44] A 4.0 - - - 2.3 2.5 3.0 2.2
B 3.9 - - - 2.2 2.7 2.9 2.3
4RBS NDM-1a (B1) 2.4 meropenem To be published (Kim, Y. et al) A 4.0 - - - 2.0 3.3 3.0 2.1
B 4.0 - - - 2.2 3.0 3.1 2.1
Wat1-H118 Wat1-D120 Wat1-H196 Wat1-Zn2 Wat2-Zn2 C3O-Zn2 N4-Zn2
1X8I CphA (B2)a 1.9 biapenem [61] 2.7 2.8 4.0 3.4 - 2.4 2.2