Table 4.
Number of protein-coding genes associated with the 25 general COG functional categories in the P. yanchengensis Y32T genome
| COG class | Count | % agea | COG description |
|---|---|---|---|
| J | 171 | 4.31 | Translation, ribosomal structure and biogenesis |
| A | 0 | 0.00 | RNA processing and modification |
| K | 258 | 6.51 | Transcription |
| L | 148 | 3.73 | Replication, recombination and repair |
| B | 2 | 0.05 | Chromatin structure and dynamics |
| D | 36 | 0.91 | Cell cycle control, cell division, chromosome partitioning |
| Y | 0 | 0.00 | Nuclear structure |
| V | 54 | 1.36 | Defense mechanisms |
| T | 222 | 5.60 | Signal transduction mechanisms |
| M | 173 | 4.36 | Cell wall/membrane/envelope biogenesis |
| N | 71 | 1.79 | Cell motility |
| Z | 0 | 0.00 | Cytoskeleton |
| W | 0 | 0.00 | Extracellular structures |
| U | 58 | 1.46 | Intracellular trafficking, secretion, and vesicular transport |
| O | 119 | 3.00 | Posttranslational modification, protein turnover, chaperones |
| C | 199 | 5.02 | Energy production and conversion |
| G | 253 | 6.38 | Carbohydrate transport and metabolism |
| E | 295 | 7.44 | Amino acid transport and metabolism |
| F | 94 | 2.37 | Nucleotide transport and metabolism |
| H | 132 | 3.33 | Coenzyme transport and metabolism |
| I | 129 | 3.25 | Lipid transport and metabolism |
| P | 186 | 4.69 | Inorganic ion transport and metabolism |
| Q | 71 | 1.79 | Secondary metabolites biosynthesis, transport and catabolism |
| R | 433 | 10.92 | General function prediction only |
| S | 353 | 8.9 | Function unknown |
| - | 508 | 12.81 | Not in COGs |
aThe percentage is based on the total number of protein-coding genes in the annotated genome