Table 1.
Enhancer binding proteins of D. vulgaris Hildenborough
| Regulator | Type | GAFTGA motif | Target operons | Function | Regulon reference |
|---|---|---|---|---|---|
| DVU0110 | TCS response regulator | GAFTGA | DVU0132-DVU0133, DVU1152 | Exopolysaccharide and biofilm synthesis,transmembrane transport | Rajeev et al., 2011 [13], this study |
| DVU0118 | TCS response regulator | GAFTGA | DVU0123-DVU0121 | Transmembrane transport | Rajeev et al., 2011 [13] |
| DVU0151 | Single-component regulator | GAFSEA | DVU0150-DVU0146 | Transmembrane transport | This study |
| DVU0539 | TCS response regulator | GAFTGA | DVU0542-DVU0545, DVU0943-DVU0946, DVU2133-DVU2132, DVU3025-DVU3033 | Lactate metabolism, transmembrane transport | Rajeev et al., 2011 [13] |
| DVU0569 | Single-component regulator | GAFTGG | DVU0571 | Amino acid metabolism | This study |
| DVU0619 | TCS response regulator | GAFTGA | DVU0617-DVU0616 | This study | |
| DVU0621 | TCS response regulator | GAFTGA | DVU0624-DVU0625, DVU3025-DVU3033 | Nitrite stress response, lactate metabolism | Rajeev et al., 2011 [13], this study |
| DVU0653 | TCS response regulator | GAFTGA | ncRNA downstream of DVU0653 | Posttranscriptional regulation | Rajeev et al., 2011 [13], this study |
| DVU0679 | TCS response regulator | GAYTGS | ncRNA downstream of DVU0679 | Posttranscriptional regulation | Rajeev et al., 2011 [13] |
| DVU0744 | TCS response regulator | GAFTGA | DVU0682 | Transcriptional regulation | Rajeev et al., 2011 [13], this study |
| DVU0804 | TCS response regulator | GAFTGA | DVU0805-DVU0806 | Posttranscriptional regulation | Rajeev et al., 2011 [13], this study |
| DVU0946 | TCS response regulator | GAFTGA | DVU0542-DVU0545, DVU0943-DVU0946, DVU2133-DVU2132 | Lactate metabolism, transmembrane transport | Rajeev et al., 2011 [13] |
| DVU1063 | TCS response regulator | GAFTGA | DVU0307, DVU0316-DVU0310, DVU0318, DVU0320, DVU0863-DVU0862, DVU1032, DVU1441, DVU1444, DVU1445-DVU1443, DVU1805, DVU1880, DVU2090 | Flagella | Rajeev et al., 2011 [13], this study |
| DVU1156 | TCS response regulator | GAFTGA | DVU1164 | Amide metabolism | Rajeev et al., 2011 [13], this study |
| DVU1419 | TCS response regulator | GAFTGA | DVU0036, DVU1418-DVU1419, ncRNA upstream of DVU3282 | Envelope stress response, posttranscriptional regulation | Rajeev et al., 2011 [13] |
| DVU1949 | Single-component regulator | GAFTGA | DVU1231-DVU1233, DVU1258, DVU3392*, DVU1952-DVU1949*, DVU0671*, DVU3290-DVU3292*, DVU2343-DVU2340*, DVU1823-DVU1821*, DVU0753-DVU0751* | Nitrogen metabolism and transport | This study |
| DVU2106 | Single-component regulator | GAFTDA | DVU2105-DVU2103, DVU2107-DVU2109 | Cell division | Fievet et al., 2011 |
| DVU2114 | TCS response regulator | GAFTGA | DVU3342-DVU3344, DORF39640-DVU2129 | Pili | Rajeev et al., 2011 [13] |
| DVU2275 | Single-component regulator | GAYTDA | DVU2272-DVU2269 | Pyruvate metabolism and transport | This study |
| DVU2359 | Single-component regulator | GAFTGA | ncRNA upstream of DVU2357 | Posttranscriptional regulation | This study |
| DVU2394 | TCS response regulator | GSFTGA | DVU2405-DVU2399 | Energy metabolism | Rajeev et al., 2011 [13] |
| DVU2827 | Single-component regulator | GAFSGA | DVU2820, DVU2822-DVU2825 | Pyruvate metabolism and transport | This study |
| DVU2894 | Single-component regulator | GAFTHA | DVU0047-DVU0043, DVU0410-DVU0409, DVU2894* | Flagella | This study |
| DVU2934 | TCS response regulator | GAFTGA | DVU2917 | Lipid A biosynthesis | Rajeev et al., 2011 [13] |
| DVU2956 | Single-component regulator | GAFTGA | DVU2957-DVU2964 | Transmembrane transport | This study |
| DVU2960 | Single-component regulator | GAFPGA | |||
| DVU2989 | Single-component regulator | GAFTGA | DVU2988-DVU2986 | Phage shock response | This study |
| DVU3023 | TCS response regulator | GAFTGA | DVU2451, DVU3025-DVU3033, DVU3284* | Lactate metabolism and transport | Rajeev et al., 2011 [13] |
| DVU3142 | Single-component regulator | GAFTGA | DVU3143-DVU3145 | Energy metabolism | This study |
| DVU3220 | TCS response regulator | GSFTGA | DVU1231-DVU1233 | Nitrogen metabolism and transport | Rajeev et al., 2011 [13] |
| DVU3305 | TCS response regulator | GAFSGA | DVU3302-DVU3298, DVU3303-DVU3305* | General stress response, transmembrane transport | Rajeev et al., 2011 [13] |
| DVU3334 | TCS response regulator | GAFTGA | DVU3339.1-DVU3337 | Potassium uptake | Rajeev et al., 2011 [13] |
| DVU3381 | TCS response regulator | GAFTGA | DVU3382-DVU3381, DVU3384 | Envelope stress response | Rajeev et al., 2011 [13] |
| DVUA0024 | TCS response regulator (pseudogene) | GAFTGA | |||
| DVUA0057 | TCS response regulator | GAFTGA | DVU0132-DVU0133, DVU1152, DVUA0030, DVUA0032-DVUA0031, DVUA0089, DVUA0036-DVUA0041 | Exopolysaccharide and biofilm synthesis | Rajeev et al., 2011 [13], this study |
| DVUA0100 | Single-component regulator | GVATGV | DVU4010, DVUA0106-DVUA0099, DVUA203-DVUA0125 | Type III secretion | This study |
| DVUA0143 | Single-component regulator | GAFTGA | DVUA0015-DVUA0007, DVUA0016 | Nitrogen metabolism | This study |
Operons that do not have σ54-dependent promoters are marked with asterisk