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. 2015 Nov 10;16:917. doi: 10.1186/s12864-015-2185-x

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© Amselem et al. 2015

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Kryze potential genome copy containing an ORF1 homologous to AVRk1 containing a cysteine-rich NB domain (PF00098.16_zf-CCHC_GAG) and a putative ORF2p with RT (PFAM: PF00078.20) and RH (PFAM: PF00075.17) domains. a Blgr_v3_contig_001018.fa:18231..24230 bp corresponding to Bgh_RIX_G4472 full-length copy with 3000 bp downstream region. AVRK1 alignment (in red) and domains annotated by PASTEC classifier (green) are represented. b Blue lines represent the two TE genomic copies mapped in the context of all the copies (brown lines) plotted to the reference TE consensus sequences Bgh_RIX_G4472 and Bgh_RIX_G5646