Table 2. Primers and probes used in this study (Tm = melting temperature in °C).
Name | Description | Sequence | Tm (°C) | Source |
---|---|---|---|---|
RT-18S-F2 | 18S forward primer for real-time PCR | 5'-ACCGCCCTAGTTCTAACCGTAAA | 62.9 | Barr et al. [22, 27] |
RT-18S-R2 | 18S reverse primer for real-time PCR | 5'-CCGCCGAGCCATTGTAGTAA | 60.5 | Barr et al. [22] |
RT-18S-P2 | 18S real-time PCR probe | 5'-Quasar 670-TGTCATCTAGCGATCCGCCGA-BHQ-2 | 63.2 | Barr et al. [22]/This study |
ITSF | 5.8S-ITS2-28S | 5'-TTGAACATCGACATTTCGAACGCAC | 64.1 | Barr et al. [22, 27] |
ITSR | 5.8S-ITS2-28S | 5'-TCCTCCGCTTATTGATATGC | 56.4 | Barr et al. [22, 27] |
425F | ITS2 forward primer for real-time PCR | 5'-ACAAYACCAGAGGGGGTYGC | 60.5–64.6 | This study |
568R | ITS2 reverse primer for real-time PCR | 5'-CGTCGATGCGCTCTTCGG | 60.8 | This study |
QP-Harm-ITS2-P8 | ITS2 real-time PCR probe for H. armigera | 5'-FAM-TGTCGTCCGYTTTAGCGTGAGAC-BHQ-1 | 64.6–66.6 | This study |
RT-ITS-zea | ITS2 real-time PCR probe for H. zea | 5'-HEX-CAACGCCATTAGTAGGCGGACTC-BHQ-1 | 66.6 | This study |