Table 5.
Distribution of clonal complexes, sequence types and antimicrobial resistance profiles (Broth microdilution assay) of C. jejuni and C. coli from pig, dairy, and beef cattle in Tanzania.
| ST-CC | ST | No. of isolates | Source | Geographical location | Resistance profilesa |
|---|---|---|---|---|---|
| Campylobacter jejuni | |||||
| 828 | 899 | 3 | Dairy | Morogoro | GenStr, CipTyl, GenTylStr |
| 1016 | 1 | Dairy | Morogoro | AmpGenTylstr | |
| 1145 | 3 | Dairy | Arusha | AmpEryStr, EryTylStr, AmpGenEryStr | |
| 1201 | 1 | Dairy | Morogoro | Gen | |
| 1465 | 1 | Beef | Arusha | GenTylStr | |
| 1563 | 4 | Dairy | Morogoro | Pan, TylTet, AmpTylStr, AmpEryStr | |
| 1635 | 2 | Dairy | Morogoro | AmpEryTet, AmpEryStr | |
| 1837 | 2 | Beef | Morogoro | Str, EryTet, | |
| 1987 | 1 | Beef | Morogoro | AmpTyl | |
| 2139 | 1 | Beef | Morogoro | Pan | |
| 2702 | 1 | Beef | Morogoro | EryStr | |
| 2878 | 1 | Beef | Iringa | Pan | |
| 4083 | 1 | Dairy | Morogoro | AmpTylStr | |
| 4085 | 3 | Dairy | Morogoro | Pan, StyTet, AmpGenStr | |
| 4679 | 1 | Dairy | Morogoro | AmpGenStr | |
| 7033 | 1 | Beef | Arusha | Str | |
| UC | 1240 | 2 | Beef | Morogoro | Pan, TylStrTet |
| 4609 | 1 | Dairy | Morogoro | GenStr | |
| 7031 | 1 | Beef | Morogoro | AmpTyl | |
| 7690 | 2 | Pig | Arusha | AmpStr | |
| 7697 | 2 | Dairy | Morogoro | Pan, StrTyl | |
| 7698 | 2 | Beef | Arusha | Ery, AmpGenTyl | |
| 7699 | 1 | Dairy | Arusha | EryTyl | |
| 7700 | 3 | Dairy | Arusha | CipTyl, StrTet, AmpGenTet | |
| 7701 | 1 | Beef | Morogoro | AmpTyl | |
| Campylobacter coli | |||||
| 828 | 872 | 2 | Pig | Iringa | CipEryTylStrTet, EryTylStrTet |
| 890 | 3 | Pig | Morogoro | AmpEryTylStrTet, CipEryTylStrTet, AmpEryTyrStr | |
| 1056 | 2 | Pig | Morogoro | CipTylStr, AmpEryTylStr | |
| 1117 | 2 | Pig | Iringa | EryStr, AmpEryStrTet | |
| 1153 | 4 | Pig | Morogoro | AmpStr, AmpEryStr, AmpEryStrTyl | |
| 1417 | 2 | Pig | Morogoro | AmpEry, AmpEryStrTyl | |
| 1432 | 2 | Pig | Iringa | AmpStrTyl, AmpTetTyl | |
| 1549 | 1 | Beef | Morogoro | EryStrTyl | |
| 1628 | 2 | Pig | Morogoro | AmpStrTyl, AmpEryStrTyl | |
| 1946 | 2 | Pig | Arusha | AmpTet, AmpStr | |
| 2507 | 6 | Pig | Morogoro | AmpStr, EryStr, StrTyl, AmpEryTyl, AmpEryTetTyl | |
| 2713 | 4 | Pig | Morogoro | AmpStr, AmpTyl, AmpStrTet | |
| 2814 | 1 | Pig | Morogoro | AmpTet | |
| 4085 | 1 | Pig | Morogoro | AmpEryStrTyy | |
| 4309 | 4 | Pig; Dairy | Morogoro | AmpEry, AmpStr, AmpEryStrTet, AmpStrTetTyl | |
| 5250 | 5 | Pig | Morogoro, Arusha | AmpStr, AmpEryTyl, AmpEryStr, AmpEryStrTyl | |
| 5305 | 2 | Pig | Iringa | AmpStrTyl, AmpEryTyl | |
| 5345 | 7 | Pig | Morogoro | EryStr, CipAmp, AmpEryStrTet, AmpEryStrTyl, AmpEryStr, CipAmpEryStr | |
| UC | 1469 | 3 | Pig | Arusha | AmpEry, AmpStrTet, AmpEryStrTyl |
| 1470 | 4 | Pig | Arusha | AmpEryStr, AmpTetTyl, | |
| 6823 | 8 | Pig | Morogoro | AmpEry, AmpEryGen, AmpStrTyl, AmpGenStrTyl, AmpEryStr, AmpEryStrTyl, CipAmpEryStrTet, CipAmpEryStrTet | |
| 7683 | 2 | Pig | Iringa | AmpEryStr | |
UC, undefined clonal complex.
a
Amp, Ampicillin; Cip, Ciprofloxacin; Ery, Erythromycin; Gen, Gentamicin; Tet, Tetracycline; Str, Streptomycin; Tyl, tylosin; Pan, Pan-susceptible.
Each antimicrobial resistance profile is underlined.
Bolded numbers show new STs deposited to Pubmlst database.