Table 1. Summary of sequencing data and the statistics of the transcriptome assembly.
| Statistical analysis | Four treatments |
|||
|---|---|---|---|---|
| Corn1 | CornJA1 | CornJAOf2 | CornOf2 | |
| Raw reads (No.) | 53,089,614 | 62,189,006 | 61,528,872 | 75,612,000 |
| Raw bases (bp) | 5,362,051,014 | 6,281,089,606 | 6,214,416,072 | 7,636,812,000 |
| ≥Q20 (%) | 92.39 | 92.38 | 92.46 | 92.39 |
| Clean reads (No.) | 48,551,508 | 56,440,612 | 55,856,974 | 68,630,658 |
| Clean bases (bp) | 4,649,917,709 | 5,415,803,095 | 5,364,910,717 | 6,587,419,456 |
| ≥Q20 (%) | 97.91 | 97.93 | 97.95 | 97.95 |
| Mapped sequences (No.) | 41,340,146 | 47,383,413 | 45,284,950 | 57,085,043 |
| Mapped bases (bp) | 4,175,354,746 | 4,785,724,713 | 4,573,779,950 | 5,765,589,343 |
| Mapped percentage (%) | 85.15 | 83.95 | 81.07 | 83.18 |
Notes: the sequence length is 2 * 101 bp, e.g., each read is 101 bp, paired-end sequencing; mapped percentage = mapped sequences/clean reads.