Table 3.
SNP | Locus | Alleles (effect/other) | Effect allele frequency | GOYA (n = 722) | TDCOB (n = 650) | Combined (n = 1372) | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
β | SE | p | β | SE | p | β | SE | p | I 2 (p HET) | ||||
zBMI | |||||||||||||
rs2069845 | IL6 | G/A | 0.49 | 0.04 | 0.05 | 0.34 | −0.02 | 0.05 | 0.62 | 0.01 | 0.04 | 0.76 | 3 (0.31) |
rs1137100 | LEPR | A/G | 0.74 | −0.17 | 0.06 | 0.0036 | −0.08 | 0.06 | 0.15 | −0.12 | 0.04 | 0.0026 | 20 (0.26) |
rs3801266 | NAMPT | T/C | 0.83 | −0.03 | 0.07 | 0.58 | 0.04 | 0.07 | 0.51 | 0.01 | 0.05 | 0.93 | 0 (0.39) |
rs2796749 | AMD1 | G/C | 0.78 | 0.03 | 0.06 | 0.60 | −0.16 | 0.06 | 0.0077 | −0.06 | 0.04 | 0.12 | 80 (0.03) |
zHeight | |||||||||||||
rs2069845 | IL6 | G/A | 0.49 | 0.02 | 0.05 | 0.65 | −0.07 | 0.06 | 0.19 | −0.02 | 0.04 | 0.56 | 36 (0.20) |
rs1137100 | LEPR | A/G | 0.74 | 0.01 | 0.06 | 0.63 | −0.08 | 0.06 | 0.17 | −0.04 | 0.04 | 0.36 | 5 (0.30) |
rs3801266 | NAMPT | T/C | 0.83 | 0.07 | 0.07 | 0.32 | −0.12 | 0.08 | 0.12 | −0.02 | 0.05 | 0.75 | 69 (0.07) |
rs2796749 | AMD1 | G/C | 0.78 | −0.12 | 0.06 | 0.046 | 0.10 | 0.07 | 0.15 | −0.02 | 0.05 | 0.64 | 82 (0.01) |
zWeight | |||||||||||||
rs2069845 | IL6 | G/A | 0.49 | 0.06 | 0.05 | 0.29 | −0.05 | 0.03 | 0.047 | −0.03 | 0.02 | 0.19 | 69 (0.06) |
rs1137100 | LEPR | A/G | 0.74 | −0.14 | 0.06 | 0.017 | −0.02 | 0.03 | 0.44 | −0.05 | 0.03 | 0.08 | 68 (0.07) |
rs3801266 | NAMPT | T/C | 0.83 | 0.02 | 0.07 | 0.82 | −0.01 | 0.04 | 0.79 | −0.01 | 0.03 | 0.89 | 0 (0.75) |
rs2796749 | AMD1 | G/C | 0.78 | −0.07 | 0.06 | 0.29 | −0.01 | 0.03 | 0.95 | −0.01 | 0.03 | 0.66 | 0 (0.33) |
Effect sizes (β), standard error (SE) and p-values are for an additive genetic model based on z-scores of each trait and are adjusted for age. Effect allele frequency is the mean frequency observed for the GOYA and TDCOB cohort control individuals. P add < 0.05 is significant and is shown in bold. Values of I 2 are percentages
BMI body mass index, CI confidence interval, HET heterogeneity, SE standard error, SNP single nucleotide polymorphism