Table 6.
MAPQ and variant caller interaction. L o g 10-transformed means for the interaction between MAPQ filter level and variant caller
| Variant caller | FreeBayes | GATK | |
|---|---|---|---|
| MAPQ | |||
| 0 | 2.8277 | 1.7635 | |
| 20 | 1.8287 | 1.8830 | |
| Sed = 0.00365 |
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