Extended data table 4.
Fold increase in metastatic nodules as compared to subcutaneous tumours of transcripts involved in antioxidant responses and NADPH generation.Data are based on RNAseq analysis of two subcutaneous tumours and two metastatic nodules for each of M405 and M481.
| Gene Name | Gene | Metastatic/Subcutaneous (Fold Change) | p-value* |
|---|---|---|---|
| GCLC | Glutamate-cysteine ligase (catalytic subunit) | 1.20 | 0.560 |
| GCLM | Glutamate-cysteine ligase (modifier subunit) | 0.86 | 0.300 |
| GSS | Glutathione synthase | 0.90 | 0.240 |
| SOD1 | Superoxide disumutase 1 | 1.09 | 0.355 |
| SOD2 | Superoxide dismutase 2 | 0.86 | 0.454 |
| SOD3 | Superoxide dismutase 3 | 0.64 | 0.189 |
| CAT | Catalase | 1.09 | 0.548 |
| GPX1 | Glutathione Peroxidase 1 | 1.30 | 0.117 |
| GPX2 | Glutathione Peroxidase 2 | 1.00 | 0.998 |
| GPX3 | Glutathione Peroxidase 3 | 0.40 | 0.048 |
| GPX4 | Glutathione Peroxidase 4 | 1.07 | 0.459 |
| GPX7 | Glutathione Peroxidase 7 | 0.83 | 0.183 |
| GPX8 | Glutathione Peroxidase 8 | 0.87 | 0.631 |
| GSR | Glutathione Reductase | 1.12 | 0.372 |
| HMOX1 | Heme Oxygenase 1 | 0.86 | 0.186 |
| HMOX2 | Heme Oxygenase 2 | 1.41 | 0.008 |
| TXN | Thioredoxin 1 | 1.16 | 0.297 |
| TXN2 | Thioredoxin 2 | 1.15 | 0.480 |
| TXNRD1 | Thioredoxin redutase 1 | 0.97 | 0.859 |
| TXNRD2 | Thioredoxin redutase 2 | 0.91 | 0.701 |
| TXNRD3 | Thioredoxin redutase 3 | 1.15 | 0.176 |
| PRDX1 | Peroxiredoxin 1 | 1.67 | 0.334 |
| PRDX2 | Peroxiredoxin 2 | 0.94 | 0.289 |
| PRDX3 | Peroxiredoxin 3 | 1.31 | 0.013 |
| PRDX4 | Peroxiredoxin 4 | 1.13 | 0.075 |
| PRDX5 | Peroxiredoxin 5 | 1.28 | 0.032 |
| PRDX6 | Peroxiredoxin 6 | 1.05 | 0.172 |
| NFE2L2 | Nuclear factor, erythroid 2-like 2 | 0.90 | 0.106 |
| G6PD | Glucose-6-phosphate Dehydrogenase | 2.20 | 0.156 |
| PGD | Phosphogluconate dehydrogenase | 0.98 | 0.758 |
| ME2 | Malic Enzyme 2 | 1.05 | 0.865 |
| CBS | Cystathione beta Synthase | 1.20 | 0.469 |
based on Bonferroni correction for multiple comparisons a p-value of 0.0016 would be considered statistically significant in this analysis