Table 3.
Genome statistics
| Attribute | Genome (total) | |
|---|---|---|
| Value | % of totala | |
| Size (bp) | 3,788,560 | 100.0 |
| DNA coding (bp) | 3,353,298 | 88.5 |
| G + C content (bp) | 2,249,198 | 59.36 |
| DNA Scaffolds | 16 | |
| Total genesb | 3,244 | 100.00 |
| Protein-coding genes | 3,189 | 98.3 |
| RNA genes | 55 | 1.7 |
| Pseudo genes | 0 | 0.0 |
| Genes in paralog clusters | 2535 | 78.4 |
| Protein coding genes with function prediction | 2,564 | 79.0 |
| Genes assigned to COGs | 2,023 | 62.3 |
| Genes assigned Pfam domain | 2,605 | 80.3 |
| Genes with signal peptides | 293 | 9.0 |
| Genes with transmembrane helices | 766 | 23.7 |
| CRISPR repeats | 15 | |
aThe percentage total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome