Table 2. Predicted Novel MicroRNAs Whose Read Number was Greater Than 10 in the Liver of Tree Shrewa.
| miRNA | Sequence | Read Number | Location in the Mapped reference Sequence |
|---|---|---|---|
| tsh-miR-new1 | AUCGGGAAAGUCAUGACGCAUU | 233 | GeneScaffold_1371:95107:95193:- |
| tsh-miR-new2 | AAAUGCAUCAGGACUUUUCA | 133 | GeneScaffold_1540:57607:57688:+ |
| tsh-miR-new3 | CAGGUCCCUGUUCAGGCGCCA | 120 | scaffold_111827:44617:44706:+ |
| tsh-miR-new4 | AAAUGCAUCAGGACUUUUCA | 95 | GeneScaffold_3954:101509:101576:+ |
| tsh-miR-new5 | AGAAAAGUCAGGACGUUUUU | 73 | GeneScaffold_1965:8472:8552:- |
| tsh-miR-new6 | UAGGAAAAGGCUUGAUGUAUU | 47 | GeneScaffold_3418:212285:212367:- |
| tsh-miR-new7 | AAAGACAUCAUGACCUUUCU | 44 | GeneScaffold_2862:20340:20417:- |
| tsh-miR-new8 | AAAUGCAUCAGGACUUUUC | 43 | scaffold_143150:13603:13679:+ |
| tsh-miR-new9 | AAAGACAUCAUGACCUUUCU | 42 | GeneScaffold_4000:66284:66361:- |
| tsh-miR-new10 | AUAUAUCAUGACCUUUCUGACA | 41 | GeneScaffold_3348:27549:27629:+ |
| tsh-miR-new11 | GGAAAAGUCAGGACAUAUUUUU | 32 | GeneScaffold_392:237217:237286:- |
| tsh-miR-new12 | CAAGUCCCUGUUCAGGCGCCA | 29 | scaffold_111037:39496:39573:+ |
| tsh-miR-new13 | UCGGAAAAGCCACGACACAUUU | 26 | GeneScaffold_2051:56933:57008:- |
| tsh-miR-new14 | GAAAAAGUCGUGACGCAUUUUU | 24 | scaffold_7441:31821:31888:+ |
| tsh-miR-new15 | UUCGGGAAUGUCGUGGCGUA | 23 | GeneScaffold_1984:111742:111825:+ |
| tsh-miR-new16 | UAGCACUGAGGUAAUGAAGCA | 22 | GeneScaffold_4320:407318:407398:- |
| tsh-miR-new17 | UGUAUCAUGGCUUUUCCGACA | 22 | scaffold_138507:126806:126884:+ |
| tsh-miR-new18 | UGGACAGUCAUGACACAUUUUU | 21 | scaffold_144204:767:841:- |
| tsh-miR-new19 | CAGGGUUUGGGGGUCGAGGGG | 20 | scaffold_49762:463:553:+ |
| tsh-miR-new20 | CAGGGUUUGGGGGUCGAGGGGG | 20 | scaffold_112869:124830:124919:- |
| tsh-miR-new21 | UGGACAGUCAUGACACAUUUUU | 20 | GeneScaffold_958:400490:400569:+ |
| tsh-miR-new22 | ACUGGAAACGUCGUGACAUUUU | 19 | GeneScaffold_39:143382:143461:- |
| tsh-miR-new23 | AAAGUCAUGACGUGUUUUUUC | 18 | GeneScaffold_2493:592697:592794:- |
| tsh-miR-new24 | UGGAAAGUCACGACACAUUUUU | 16 | scaffold_116786:19815:19891:+ |
| tsh-miR-new25 | AGAUGCAUCUCGACUUUCCU | 16 | scaffold_61753:113:191:+ |
| tsh-miR-new26 | AAAAAUACGUCAGGACUUUUC | 16 | GeneScaffold_951:129203:129286:+ |
| tsh-miR-new27 | AUUGGAAAAGUCGUGACAUAUU | 15 | GeneScaffold_1897:86780:86865:- |
| tsh-miR-new28 | AGGAAAGUCAUGCUGCAUUUUU | 14 | GeneScaffold_5176:213958:214037:- |
| tsh-miR-new29 | AAAGAUGCGUCAUGACUUUUC | 13 | GeneScaffold_3849:235632:235709:- |
| tsh-miR-new30 | CAGGUCCCUGUUCAGGCGCC | 13 | scaffold_71896:8426:8502:- |
| tsh-miR-new31 | AAAAAUACGUCAGGACUUUUC | 12 | scaffold_129971:5331:5411:+ |
| tsh-miR-new32 | AGAAAAGUCACGACAUGUUUUU | 12 | scaffold_128528:23932:24001:- |
| tsh-miR-new33 | UACGUCAUGUCUUUUCCGAUGA | 11 | GeneScaffold_2915:52587:52665:- |
| tsh-miR-new34 | AUUGGAAAAGUCGUGACAUAUU | 12 | GeneScaffold_4519:18599:18682:- |
| tsh-miR-new35 | AAAAUAUGUCUUGACUUUCCU | 11 | GeneScaffold_2467:83460:83537:+ |
| tsh-miR-new36 | AAAUACGUUAUGACUUUCCCAA | 11 | GeneScaffold_265:99552:99633:- |
| tsh-miR-new37 | GAGAAAGUCGUGAUGUAUUUUU | 11 | GeneScaffold_3303:423588:423666:- |
| tsh-miR-new38 | AAAGAUGCGUCAUGACUUUUC | 11 | GeneScaffold_383:83204:83279:- |
| tsh-miR-new39 | UUCUGUAGUCUUGGGGUCGCGCUG | 11 | GeneScaffold_4675:153676:153773:- |
| tsh-miR-new40 | AAGGAUGUGAGGCAGGCGAG | 11 | scaffold_11524:3240:3336:- |
| tsh-miR-new41 | AGAAGUCAUGACGUAUUUUUUU | 11 | scaffold_147786:4714:4783:- |
aAbbreviations: miR (NA), MicroRNA; Tsh, Tree Shrew.