TABLE 1.

Names, annealing sites, and sequences of primers used in CKO studies

Primer name	Region of CVB3 strain 28 genome	Strand	Nucleotide sequence (5′ to 3′)b
Sa	1–20	+	TTAAAACAGCCTGTGGGTTG
S4a	45–74	+	CGCTAGCACTCTGGTATCACGGTACCTTTG
S5	86–113	+	TATACCCCCTCCCCCAACTGTAACTTAG
SReturn	291–312	−	TACACTGGGGTAGTGCTGAGCG
E2a	450–464	+	TCCGGCCCCTGAATG
E3a	537–563	−	ACACGGACACCCAAAGTAGTCGGTTCC
E3Sub	535–549	−	AGTAGTCGGTTCCGC
PinE3	537–563	−	GGAATTCATCGATACGCGACACGGACACCCAAAGTAGTCGGTTCC
ID13	3601–3620	+	TGGATTTTCCGAACCAGGTG
CREKORev	4352–4417	−	CAAGCAAACCGGTTCTATCCTACACTTACTTTTAAATTGAATATAATTGCTCATCTTCTTCTCAAG
CREKO	4375–4434	+	TATTCAATTTAAAAGTAAGTGTAGGATAGAACCGGTTTGCTTGCTCCTGCACGGGAGCCC
XBA	4932–4958	−	GCATGTCTAGAGAGTATCTGACCTGTG
2B1	3746–3764	+	GGAGTGAAGGACTATGTGG
4523Rev	4504–4523	−	GGTCTGGCGGTAGTGAGTAC
2C2	4450–4469	−	CAATTAAGTTTGTTGCCACC
2C7	4166–4186	+	GAAAAACACGAATTCCTGAAC
Pin	NAc	NA	GGAATTCATCGATACGCG
Pin5End1	1–10	+	GGAATTCATCGATACGCGTTAAAACAG
Pin5End5	15–24	+	GGAATTCATCGATACGCGGGGTTGATCC

^aPreviously published in the work of Kim et al. (25).

^bUnderlined sequences are nongenomic cDNA.

^cNA, not applicable.