TABLE 1.
Parameters | Value(s) for indicated NP |
|||
---|---|---|---|---|
ERVEV NP(1–482) | ERVEV NPhead | KUPV NP | HAZV NP | |
Data collection statistics | ||||
Cell parameters | ||||
a (Å) | 49.90 | 46.08 | 73.98 | 67.40 |
b (Å) | 67.90 | 104.29 | 73.98 | 72.17 |
c (Å) | 154.08 | 70.54 | 423.98 | 453.67 |
α, β, γ (°) | 90.0, 93.6, 90.0 | 90.0, 92.4, 90.0 | 90.0, 90.0, 90.0 | 90.0, 90.0, 90.0 |
Space group | P21 | P21 | P41212 | P212121 |
Wavelength used (Å) | 1.0000 | 1.0000 | 1.0000 | 1.0000 |
Resolution (Å)a | 50.00–2.35 (2.39–2.35) | 50.00–1.80 (1.83–1. 80) | 50.00–2.60 (2.64–2.60) | 50.00–2.90 (2.95–2.90) |
No. of all reflectionsa | 184,478 (50,568) | 227,184 (11,363) | 421,320 (17,390) | 256,728 (17,338) |
No. of unique reflectionsa | 42,902 (2,134) | 61,401 (3,071) | 37,285 (1,739) | 42,788 (2,442) |
Completeness (%) | 99.3 (100.0) | 99.6 (100.0) | 98.5 (93.9) | 84.7 (100) |
Average I/σ(I) | 9.1 (3.9) | 14.7 (3.6) | 20.9 (4.3) | 11.1 (4.0) |
Rmergeb (%) | 12.6 (39.9) | 7.7 (35.1) | 9.2 (42.2) | 11.6 (35.2) |
Refinement statistics | ||||
No. of reflections used [σ(F) > 0] | 42,875 | 61,367 | 37,162 | 42,731 |
Rworkc (%) | 17.4 | 16.8 | 21.2 | 20.7 |
Rfreed (%) | 24.8 | 20.2 | 28.0 | 28.7 |
RMSD | ||||
Bond distance (Å) | 0.008 | 0.006 | 0.009 | 0.009 |
Bond angle (°) | 1.109 | 0.992 | 1.150 | 0.922 |
Average B value (Å2): | ||||
For protein atoms | 44.1 | 30.0 | 51.4 | 62.6 |
For ligand atoms | 0 | 0 | 0 | 0 |
For solvent atoms | 46.3 | 37.7 | 44.0 | 39.2 |
No. of: | ||||
Protein atoms | 7,381 | 5,750 | 7,340 | 14,874 |
Ligand atoms | 0 | 0 | 0 | 0 |
Solvent atoms | 270 | 679 | 92 | 104 |
Ramachandran plot (%) | ||||
Favored regions | 95.9 | 97.5 | 93.1 | 96.1 |
Allowed regions | 3.9 | 2.4 | 6.5 | 3.9 |
Outlier regions | 0.2 | 0.1 | 0.4 | 0 |
Numbers in parentheses are corresponding values for the highest-resolution shell.
Rmerge = ΣhΣl |Iih − <Ih>|/ΣhΣI <Ih>, where <Ih> is the mean of the observations Iih of reflection h.
Rwork = Σ(||Fp(obs)| − |Fp(calc)||)/Σ|Fp(obs)|.
Rfree is an R factor for a preselected subset (5%) of reflections that was not included in the refinement.