Table 2.
Significant SNPs associated with racing performance
| SNP ID | Chr | Position | Major allele | Minor allele | p-value | MAF | SNP effect | Gene* | Description |
|---|---|---|---|---|---|---|---|---|---|
| BIEC2_577013 | 22 | 4632335 | G | A | 0.001084 | 0.16 | 0.04011 | RALGAPA2 | Ral GTPase activating protein, alpha subunit 2 |
| BIEC2_579415 | 22 | 8075458 | G | A | 0.0005322 | 0.12 | 0.04527 | KIF16B | Kinesin family member 16B |
| BIEC2_580028 | 22 | 8877380 | G | A | 0.0002055 | 0.50 | 0.0524 | MACROD2 | MACRO domain containing 2 |
| BIEC2_580291 | 22 | 9113291 | A | G | 0.0002192 | 0.26 | 0.05192 | MACROD2 | MACRO domain containing 2 |
| BIEC2_580790 | 22 | 11114068 | G | A | 0.000647 | 0.34 | 0.04417 | SPTLC3 | Serine palmitoyltransferase, long chain base subunit 3 |
| BIEC2_600400 | 22 | 44418264 | A | G | 0.0004451 | 0.27 | 0.0468 | AK128005 | |
| BIEC2_600504 | 22 | 44665253 | A | C | 0.0008664 | 0.17 | 0.04162 | PPP4R1L | Protein phosphatase 4, regulatory subunit 1-like |
| BIEC2_600563 | 22 | 45058230 | A | C | 3.13E-05 | 0.10 | 0.06649 | STX16 | Syntaxin 16 |
| BIEC2_600572 | 22 | 45095728 | G | A | 3.13E-05 | 0.10 | 0.06649 | STX16 | Syntaxin 16 |
| BIEC2_600582 | 22 | 45181810 | G | A | 3.13E-05 | 0.10 | 0.06649 | GNAL | Guanine nucleotide binding protein (G protein), alpha activating activity polypeptide |
SNP, single nucleotide polymorphism; MAF, minor allele frequency.
*
Genes within 5 kb up- and down-stream of SNPs were annotated.