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. 2015 Nov 14;16:940. doi: 10.1186/s12864-015-2181-1

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© Sempéré et al. 2015

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Plot of the individuals according to their coordinates on the first two principal components of the principal component analysis including 44,554 SNPs genotyped on 685 individuals from 22 cattle populations representative of the cattle genetic diversity. Eight EUT (Abondance/ABO, Angus/ANG, Aubrac/AUB, Charolais/CHA, Holstein/HOL, Montbéliard/MON, Normande/NOR and Salers/SAL), four AFT (Baoulé/BAO, Lagune/LAG, N’Dama/NDA and Somba/SOM), six ZEB (Brahman/BRM, Nelore/NEL, Gir/GIR, Zebu Bororo/ZBO, Zebu Fulani/ZFU and Zebu from Madagascar/ZMA) and four admixed populations (Borgou/BOR, Kouri/KUR, Oumes Zaër/OUL and Santa Gertrudis/SGT) genotyped on the Illumina Bovine SNP50v1 were selected. Data has been filtered using default parameters