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. 2015 Nov 14;9:77. doi: 10.1186/s12918-015-0224-5

Table 2.

Associations between the metabolites-reactions-enzymes-genes-logFC values. Positive logFC values indicate the logarithmic foldness of up-regulation of respective genes

Metabolite Metabolite's Reaction Enzyme catalyzing the reaction Gene association of the enzyme logFC compared to Glucose
O-BGHEXA O-GMH O-XPE O-AHP O-GM3 SOP TYR O-MHE O-CHE X 3 Glc 4
H2SO3 H2SO3 + 3 NADPH => H2S + 3 NADP + 3 H2O Sulfite reductase (NADPH) AO090001000571 −1.74 −2.52 −2.07 −2.24 −2.16 −4.11 −2.5 −3.51 −4.4 −4.61
SLF SLFe => SLF Sulfate transporter AO090003000798 −1.53 −1.52 - −1.74 −1.56 −4.26 −3.57 −4.12 −3.75 −4.08
UPGIII SAM + UPGIII => SAH + PRECOR Uroporphyrin-III C-methyltransferase AO090020000339 −1.57 −1.82 −1.5 −1.57 −1.37 −2.44 −2.36 −3.18 −2.48 −2.64
PETHM PE => DAGLY + PETHM Phospholipase C AO090103000073 1.26 1.28 1.1 0.95 0.75 1.04 0.91 1.26 0.95 0.74
T3P1 R5P + XUL5P <=> S7P + T3P1 Transketolase AO090023000345 1.2 1.09 1.04 1.27 1.08 0.98 1.33 1.27
E4P + XUL5P <=> F6P + T3P1 - -
XUL5P + FALD <=> T3P1 + GLYN
TAUR TAUR + AKG + O2 => H2S + AMIACE + SUCC + CO2 Alpha-ketoglutarate-dependent taurine dioxygenase AO090023000531 −1.4 - −1.69 −1.55 −1.44 - −1.53 −2.1 −1.86 -

Negative logFC values indicate the logarithmic foldness of down-regulation of respective genes

Abbreviations: H 2 SO 3 sulfite, SLF sulfate, UPGIII Uroporphyrinogen III, PETHM ethanolamine phosphate, T3P1 D-glyceraldehyde 3-phosphate, TAUR taurine, O-BGHEXA 1,3:1,4-β-glucohexaose, O-GMH 63-α-D-glucosyl-maltotriosyl-maltotriose, O-XPE xylopentaose, O-AHP arabinoheptaose, O-GM3 61-α-D-galactosyl-mannotriose, SOP sophorose, TYR turanose, O-MHE mannohexaose, O-CHE cellohexaose, X 3 Glc 4 -borohydride reduced; O-X3G4R xyloglucan