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. 2015 Nov 17;6:941. doi: 10.3389/fpls.2015.00941

Table 1.

Prediction accuracy of TSW, NSeed, and BegFlo within the CRB339 collection.

Phenotypic prediction accuracy Genomic prediction accuracy 2007_2007 Genomic prediction accuracy 2007_2003
kPLSR LASSO GBLUP BayesA BayesB kPLSR LASSO GBLUP BayesA BayesB
TSW Mean 0.93 0.86 0.82 0.86 0.86 0.86 0.83 0.79 0.82 0.83 0.83
stdev 0.02 0.02 0.03 0.03 0.03 0.03 0.03 0.04 0.03 0.03 0.03
NSeed Mean 0.69 0.73 0.66 0.73 0.73 0.72 0.67 0.64 0.67 0.68 0.67
stdev 0.06 0.04 0.05 0.04 0.04 0.04 0.05 0.06 0.06 0.05 0.05
BegFlo Mean 0.79 0.78 0.76 0.78 0.78 0.79 0.64 0.63 0.64 0.64 0.65
stdev 0.05 0.04 0.04 0.04 0.04 0.04 0.05 0.06 0.05 0.05 0.05

Mean and standard deviation (stdev), across 200 repetitions, of the phenotypic prediction accuracy and of within- and across-year genomic prediction accuracies are provided for each trait.