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. 2015 Nov 17;10(11):e0143038. doi: 10.1371/journal.pone.0143038

Table 2. Statistics of distance and dihedral angle restraints used for 3D structure calculations and quality ensemble of 200 NMR-derived structures of the peptides on the last steps of MD simulations with the time-averaged distance and dihedral angle restraints.

Peptide
Tat1_4-5TO Tat1_8-9TO Tat1_8-9TOD Tat1_4-5TO,8-9TOD Tat1_A4-5,8–9
Interproton distances: total number 57 36 48 48 71
intra-residue 46 27 39 37 59
i, i+1 11 9 9 11 11
i, i+2 0 0 0 0 1
Dihedral angle restraints a 18 22 23 17 25
Structure b 8,9 β I or IV (38%) - - 6 γ(63%) 5,6 β I or IV (81%)
Hydrogen bonds c s.c.6-CO5 - 10-CO8 HN7-CO5 s.c10-CO12
RMSD 1-9bb [Å] 1.008 1.357 1.187 0.865 1.140
Rg heavy [Å] 8.4 9.7 7.7 8.3 9.5

aThe distance constraints and the 3JHNHα vicinal coupling constants were used in the HABAS algorithm of the DYANA package to generate φ, ψ and χ1 dihedral angle restraints.

b The content of the conformers with indicated turn structure is given in parentheses.

c Hydrogen bonds appearing in more than 50% of the structures in the final ensemble.