Table 2.
Mitochondrial genomes examined for this study. Genomes with duplicate control regions are indicated with an asterisk; partial genome sequences are indicated with a superscript and sections missing from them are indicated below the table. Diamonds (◆) indicate taxa that were included in the base composition analyses. Nomenclature for species formerly included in the genus Aratinga follows the revision by Remsen et al. (2008).
| Species | Accession number | Reference | |
|---|---|---|---|
| Nestor notabilis | ◆ | KM611472 | This study |
| Strigops habroptilusa | ◆ | NC_005931 | Harrison et al. 2004 |
| Nymphicus hollandicus | ◆ | NC_015192 | Pacheco et la. 2011 |
| Calyptorhynchus baudinii | JF414242 | White et al. 2011 | |
| Calyptorhynchus lathami | JF414241 | White et al. 2011 | |
| Calyptorhynchus latirostris | JF414243 | White et al. 2011 | |
| Cacatua moluccensis | ◆ | JF414239 | White et al. 2011 |
| Cacatua pastinator | JF414240 | White et al. 2011 | |
| Psittacus erithacus* | ◆ | KM611474 | This study |
| Ara militaris | ◆ | KM611466 | This study |
| Rhyncopsitta terrisi | KF010318 | Urantowka et al. 2013d | |
| Thectocercus [Aratinga] acuticaudata | JQ782214 | Urantowka et al. 2013a | |
| Psittacara [Aratinga] brevipes | KC936100 | Urantowka et al. 2013c | |
| Eupsittula [Aratinga] pertinax | ◆ | NC_015197 | Pacheco et al. 2011 |
| Amazona barbadensis* | JX524615 | Urantowka et al. 2013b | |
| Amazona o. ochrocephala* | ◆ | KM611467 | This study |
| Forpus passerinus* | ◆ | KM611470 | This study |
| Forpus modestus (sclateri)*b | ◆ | HM755882 | Pacheco et al. 2011 |
| Brotogeris cyanoptera | ◆ | NC_015530 | Pacheco et al. 2011 |
| Myiopsitta monachus | ◆ | KM611471 | This study |
| Pionites leucogasterc | KM611478, KM611479 | This study | |
| Deroptyus accipitrinus*d | ◆ | KM611476 | This study |
| Psittrichas fulgidus | ◆ | KM611475 | This study |
| Coracopsis vasa | ◆ | KM611468 | This study |
| Neophema chrysogaster | JX133087 | Miller et al. 2013 | |
| Melopsittacus undulatus* | ◆ | NC_009134 | Guan et al. unpublished |
| Melopsittacus undulatus*e | KM611477 | This study | |
| Agapornis roseicollis | ◆ | NC_011708 | Pratt et al. 2009 |
| Prioniturus luconensis* | ◆ | KM611473 | This study |
| Tanygnathus lucionensisf | ◆ | KM611480 | This study |
| Eclectus roratus | ◆ | KM611469 | This study |
a
S. habroptilus CR
b
F. modestus tPro/CR1/ND6/tGlu/CR2
c
P. leucogaster partial 16S/tLeu/ND1/tIle/tGln/tMet/partial ND2; tPro/partial ND6
d
D. accipitrinus CR1/ND6/tGlu/CR2
e
M. undulatus ND4L/ND4/tHis
f
T. luconensis partial ND6/tGlu/CR/tPhe/12S