TABLE 4.
Enzyme | Experimental % inhibition with 40 μM inhibitora | Computational result |
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---|---|---|---|---|---|---|---|
Binding energy (kcal/mol)b | Inhibitor-enzyme distance (Å)c |
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O-1–Zn1 | O-1–Zn2 | O-3–Zn1 | O-2–K224 N-ζ | N-3–K150a N-ζ | |||
IMP-1-V67Ad | 33 ± 10 | −10.7 ± 0.5 | 2.3 | 1.9 | 2.1 | 2.9 | 3.4 |
IMP-1 (V67) | 85 ± 5 | −11.8 ± 0.8 | 2.1 | 1.9 | 2.0 | 3.1 | 3.2 |
IMP-1-V67I | 58 ± 11 | −11.4 ± 0.4 | 2.3 | 1.8 | 1.9 | 2.7 | 3.6 |
IMP-10 (F67) | 49 ± 5 | −11.0 ± 0.6 | 2.1 | 1.9 | 2.2 | 3.0 | 3.3 |
Percent inhibition values are the averages for three experiments ± standard deviations.
The binding energies reported are the average binding energies of the highest-ranked clusters of docking conformations ± standard deviations.
The distances reported are distances between inhibitor atoms and enzyme atoms found in the highest-ranked docking conformation (see Fig. 4B). O-1 is the nitro group oxygen coordinating the two Zn(II) ions, O-2 is the nitro group oxygen hydrogen bonding with K224, O-3 is the deprotonated phenol oxygen coordinating Zn1, and N-3 is the benzothiazole nitrogen that interacts electrostatically with K150a.
Amino acid identities are shown in bold.