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. 2015 Nov 17;59(12):7299–7307. doi: 10.1128/AAC.01651-15

TABLE 4.

Experimental and computational results of inhibition study with compound 6142342

Enzyme Experimental % inhibition with 40 μM inhibitora Computational result
Binding energy (kcal/mol)b Inhibitor-enzyme distance (Å)c
O-1–Zn1 O-1–Zn2 O-3–Zn1 O-2–K224 N-ζ N-3–K150a N-ζ
IMP-1-V67Ad 33 ± 10 −10.7 ± 0.5 2.3 1.9 2.1 2.9 3.4
IMP-1 (V67) 85 ± 5 −11.8 ± 0.8 2.1 1.9 2.0 3.1 3.2
IMP-1-V67I 58 ± 11 −11.4 ± 0.4 2.3 1.8 1.9 2.7 3.6
IMP-10 (F67) 49 ± 5 −11.0 ± 0.6 2.1 1.9 2.2 3.0 3.3
a

Percent inhibition values are the averages for three experiments ± standard deviations.

b

The binding energies reported are the average binding energies of the highest-ranked clusters of docking conformations ± standard deviations.

c

The distances reported are distances between inhibitor atoms and enzyme atoms found in the highest-ranked docking conformation (see Fig. 4B). O-1 is the nitro group oxygen coordinating the two Zn(II) ions, O-2 is the nitro group oxygen hydrogen bonding with K224, O-3 is the deprotonated phenol oxygen coordinating Zn1, and N-3 is the benzothiazole nitrogen that interacts electrostatically with K150a.

d

Amino acid identities are shown in bold.