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. Author manuscript; available in PMC: 2015 Nov 18.
Published in final edited form as: Ann Appl Stat. 2015 Nov 2;9(3):1533–1548. doi: 10.1214/15-AOAS836

Table 5.

Data from Haffner et al. (2013)

Site Tumor Observed Mutations
PTEN del. TP53 R248Q SPOP F133L ATRX inversion
Mutation Probabilities → 0.004 0.008 0.023 0.004
Prostate P1 √ √ √
P2
P3
P4
P5
P6 √
P7
P8 √
P9
Local Node L1
Lung B1 √ √ √
Liver M5 √ √ √ √
Gastric Node M38 √ √ √ √
Lung M40 √ √ √ √
1

Mutations that were not observed in TCGA were assigned a marginal probability of (a+1)−1, where a is the number of cases observed in TCGA.