Fig. 3.

Platyrrhini simian foamy virus (SFV) a LTR-gag and b polymerase phylogenies inferred using maximum likelihood analysis. An alignment of 399 LTR-gag and 343 nucleotides from 22 to 31 taxa, respectively, were used in the analysis. New sequences generated in the current study are in blue and red text. Red text indicates that the phenotypic and genotypic results did not match and genotypic results are provided. Bootstrap support was determined using 1000 nonparametric resampling replicates and values ≥70 % are provided at nodes. aca Alouatta caraya, ase Alouatta seniculus, agu Alouatta guariba, abe Alouatta belzebul, asp Ateles species, cme Cajacao melanocephalus, cja Callithrix jacchus, cxa Cebus xanthosternos, cap Cebus apella, cro Cebus robustus, lro Leontopithecus rosalia, lch Leontopithecus chrysomelas, csp Chiropotes species, cge Callithrix geoffroyi, ssc Saimiri sciureus, sus Saimiri ustus, ssp Saimiri species, csp Chlorocebus species, ptr Pan troglodytes. Scale bar is number of substitutions/site