TABLE 3.
Most relevant genetic differences in accessory genome of Helicobacter pullorum
| Isolate | Contig | Contig position (bp) | Predicted length (bp) | % G+C | Observation |
|---|---|---|---|---|---|
| 229254/12 | 55 | 5,149 | 30.73 | Putative plasmid (probably more than 10 copies per chromosome) | |
| 229254/12 | 88 | 4,149 | 33.21 | Putative plasmid (probably more than 10 copies per chromosome) | |
| 229313/12 | 7 | 94358–130742 | 36,385 | 35.26 | PHAST result: intact prophage |
| 229313/12 | 29 | 30609–41976 | 11,368 | 29.42 | Remnant prophage? BLAST results: Campylobacter jejuni putative prophages; no significant PHAST result |
| 229313/12 | 48 | 9,097 | 30.89 | Predicted annotation includes several hypothetical proteins | |
| 229334/12 | 58 | 1–7656 | 7,656 | 32.84 | Predicted annotation includes several hypothetical proteins |
| 229334/12 | 102 | 7,140 | 33.33 | Predicted annotation includes several hypothetical proteins | |
| 229334/12 | 103 | 13,867 | 29.96 | Predicted annotation includes several hypothetical proteins | |
| 229334/12 | 107 | 15,702 | 31.75 | Predicted annotation includes several hypothetical proteins | |
| 229334/12 | 111 | 9,151 | 31.56 | Predicted annotation includes several hypothetical proteins | |
| 229334/12 | 114 | 8,140 | 32.94 | Predicted annotation includes several hypothetical proteins | |
| 229336/12 | 46 | 24,483 | 29.48 | Putative conjugative plasmid (probably fewer than two copies per chromosome); BLAST results: Campylobacter jejuni putative plasmids and integrative conjugative elements | |
| All but 229313/12 | 1a | 25,000–27,000 | 35.12 | Type VI secretion system locus (Fig. 3) |
a
The T6SS genetic cluster is located in the contig “1” for all strains, except for strain 229334/12, where it is fragmented in more than one contig (contigs 1, 2, and 3).