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. 2015 Nov 18;10(11):e0143436. doi: 10.1371/journal.pone.0143436

Table 4. List of hub genes that have high connectivity in each module from weighted gene co-expression network analysis.

Module Probe Identification Scaled positive K Scaled negative K Gene Symbol Gene Title
Yellow Ssc.12263.1.A1_at 1 0.4804 SOX13 SRY (sex determining region Y)-box 13
Ssc.5394.1.S1_at 0.9904 0.4023 CEP290 Centrosomal protein 290kDa
Ssc.2361.1.A1_at 0.9504 0.499 PPP1R3D Protein phosphatase 1, regulatory subunit 3D
Ssc.21783.2.S1_a_at 0.3689 1 MRPL2 Mitochondrial ribosomal protein L2
Turquoise Ssc.27885.1.S2_at 1 0.1923 HNRNPA2B1 Heterogeneous nuclear ribonucleoprotein A2/B1
Ssc.30052.1.A1_at 0.9191 0.192 ZNF613 Zinc finger protein 613
Ssc.9133.1.A1_at 0.2016 1 REXO2 REX2, RNA exonuclease 2 homolog (S. Cerevisiae)
Ssc.18377.3.S1_a_at 0.1898 0.9515 P2RX4 Purinergic receptor P2X, ligand-gated ion channel, 4
Ssc.18377.1.S1_at 0.1915 0.9225 P2RX4 Purinergic receptor P2X, ligand-gated ion channel, 4
Blue Ssc.9533.1.A1_at 1 0.2562 ALPPL2 Alkaline phosphatase,placental-like 2
Ssc.4154.1.A1_at 0.9672 0.268 RANBP17 Ran Binding Protein 17
Ssc.28951.1.S1_at 0.9434 0.3428 NFIB Nuclear factor I/B
Ssc.12664.2.S1_at 0.9424 0.1939 SLCO3A1 Solute carrier organic anion transporter family, member 3A1
Ssc.30327.1.A1_at 0.9054 0.2323 TEX9 Testis expressed 9
Ssc.101.1.S1_at 0.1737 1 SPP1 Secreted phosphoprotein 1
Ssc.9061.1.A1_at 0.2551 0.9307 CST6 Cystatin E/M
Green Ssc.5401.1.S1_at 1 0.5092 GINS1 GINS complex subunit 1 (Psf1 homolog)
Ssc.873.1.S1_at 0.9458 0.4352 CDC2 Cell division cycle 2, G1 to S and G2 to M
Ssc.11668.1.A1_at 0.9002 0.5182 KPNA2 Karyopherin alpha 2 (rag cohort 1, importin alpha 1)
Ssc.20730.1.S1_at 0.3122 1 NOLA2 NHP2 ribonucleoprotein homolog (Yeast)
Ssc.2505.2.S1_at 0.3294 0.9861 AKAP11 A kinase (PRKA) anchor protein 11
Brown Ssc.23503.1.S1_at 1 0.4688 MYD88 Myeloid differentiation primary response gene (88)
Ssc.11046.2.S1_at 0.9736 0.4039 SEC22L1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)
Ssc.5789.2.S1_at 0.967 0.4244 SEC22L1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)
Ssc.800.1.S1_at 0.3346 1 ATP1A1 ATPase, Na+/K+ transporting, alpha 1 polypeptide