Table 6. Summary of number of alleles in the four tag SNPs.
SNP | Allele | Controls | Cases | χ2 | P | OR | Pc1 | Pc2 |
rs6762399 | C | 111 | 120 | 0.83 | 0.362 | 0.83 | 1.0 | 0.844 |
T | 89 | 80 | ||||||
rs13098637 | T | 76 | 53 | 9.06 | 0.003 | 2.25 | 0.01 | 0.012 |
C | 24 | 47 | ||||||
rs3976523 | A | 140 | 133 | 0.57 | 0.452 | 1.18 | 1.0 | 0.898 |
C | 60 | 67 | ||||||
rs7618348 | C | 150 | 138 | 0.047 | 0.828 | 1.05 | 1.0 | 0.999 |
T | 50 | 62 |
Pc1: P value corrected with the Bonferroni method; Pc2: P value after the permutation test (with 10 000 replacements).