Table 4B. Total number of putative SVs called from across various sub-sampled data of Patient 46T.
| Methods | Number of SVs called by Breakdancer across downsampled rates | |||||
|---|---|---|---|---|---|---|
| 1x (base) | 2x | 3x | 4x | 5x | 6x | |
| BatAlign | 39376 | 13105 | 7758 | 5180 | 3703 | 2800 |
| Bowtie2 | 103721 | 29114 | 20133 | 15272 | 12332 | 10399 |
| BWA | 45184 | 9016 | 5129 | 3284 | 2330 | 1739 |
| BWA-SW | 52380 | 34729 | 22040 | 14931 | 10853 | 8259 |
| GEM | 16768 | 6449 | 3271 | 1969 | 1315 | 962 |
| SeqAlto | 56801 | 16760 | 10147 | 6831 | 4939 | 3829 |
| BWA-MEM | 68227 | 15062 | 9184 | 6135 | 4344 | 3237 |
The library used had ∼20X in sequencing depth. A total of 126 validated SVs (31) were used for this comparison.