Table 2. Thermodynamic parameters determined for the interaction of embonic acid with human m-NAD(P)-ME.
Characteristics | m-NAD(P)-ME | aAverage N (sites) | bKd (μM) | cΔG (kcal/mol) | dΔH (kcal/mol) | fTΔS (kcal/mol) | eΔS (kcal/mol/deg) |
---|---|---|---|---|---|---|---|
WT | 3.8 ± 0.2 | 2.7 ± 0.7 | −7.6 | −4.6 ± 0.3 | 3.0 | 9.9 | |
Tetramer interface mutant | H142A/D568A | 1.4 ± 0.03 | 0.4 ± 0.1 | −8.8 | −12.3 ± 0.4 | −3.5 | −11.7 |
Exo site mutant (at tetramer interface) | R197E | 3.4 ± 0.1 | 1.0 ± 0.2 | −8.2 | −5.1 ± 0.1 | 3.1 | 10.5 |
Dimer interface mutant | Q51A/E90A | 1.8 ± 0.1 | 1.1 ± 0.4 | −8.1 | 4.7 ± 0.4 | 12.8 | 42.8 |
Fumarate site mutant (at dimer interface) | E59N | 2.0 ± 0.2 | 3.5 ± 1.1 | −7.4 | −1.7 ± 0.2 | 5.8 | 19.4 |
R67A | 1.9 ± 0.2 | 4.0 ± 0.7 | −7.3 | 4.0 ± 0.2 | 11.4 | 38.1 | |
R91A | 3.7 ± 0.4 | 13.1 ± 3.8 | −6.7 | −1.7 ± 0.3 | 5.0 | 16.5 |
Average N (sites) signifies the stoichiometry of embonic acid in a tetrameric malic enzyme at equilibrium.
Kd (μM) represents the dissociation constant of embonic acid against m-NAD(P)-ME, which is reciprocal of KA (association constant).
ΔG (kcal/mol)
ΔH (kcal/mol) and
ΔS (kcal/mol/deg) represent the free energy change during the binding process.
T was fixed at 298K.