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. 2015 Oct 27;112(45):13862–13867. doi: 10.1073/pnas.1512959112

Table S3.

mRNAs used for structural and biochemical analysis

mRNAs, 5′–3′ A-site codon Assay(s) used
GGCAAGGAGGUAAAAAUGAAAUAGU AAA mRNA cleavage assay WT HigB postcleavage structure
GGCAAGGAGGUAAAAAUGAmAmAmUAGU AmAmAm 70S-HigB ΔH92 precleavage sate structure
GGCAAGGAGGUAAAAAUGGAAUAG GAA mRNA cleavage assay
GGCAAGGAGGUAAAAAUGCAAUAGU CAA mRNA cleavage assay
GGCAAGGAGGUAAAAAUGUAACAGA UAA mRNA cleavage assay
GGCAAGGAGGUAAAAAUGAGAUAGU AGA mRNA cleavage assay
GGCAAGGAGGUAAAAAUGACAUAGU ACA mRNA cleavage assay
GGCAAGGAGGUAAAAAUGAUAUAGU AUA mRNA cleavage assay
GGCAAGGAGGUAAAAAUGAAGUAGU AAG mRNA cleavage assay
GGCAAGGAGGUAAAAAUGAACUAGU AAC mRNA cleavage assay
GGCAAGGAGGUAAAAAUGAAUCAGA AAU mRNA cleavage assay
GGCAAGGAGGUAAAAAUGCCAGAAA CCA mRNA cleavage assay
GGCAAGGAGGUAAAAAUGCCCGAAA CCC mRNA cleavage assay
GGCAAGGAGGUAAAAAUGAUUUAGU AUU mRNA cleavage assay
GGCAAGGAGGUAAAAAUGAmCmAmUUU AmCmAm HigB ΔH92 precleavage state structure

Nucleotides followed by “m” contain a 2′-OCH3 group used to prevent mRNA cleavage during crystallization.