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. 2015 Aug 8;31(23):3758–3766. doi: 10.1093/bioinformatics/btv466

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© The Author 2015. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Fig. 2. — Number of genome-wide conserved motifs for both alignment-based and alignment-free discovery for different values of $C_{thres}$ and $F_{thres}$ and different subsets of the six BLS thresholds T_i ( $T_{1} = 15 %, T_{2} = 50 %, T_{3} = 60 %, T_{4} = 70 %, T_{5} = 90 %$ and $T_{6} = 95 %$ ). Top number: real Monocot dataset; bottom number between brackets: random dataset (zeroth-order Markov model). The colors represent the false discovery rate (see legend)